Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryzias_20latipes_20[refseq_20GCF_5F000313675.1_202007-05-09] 7,189 sequences; 869,818,208 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq7169 163 5e-38 seq6765 136 7e-30 seq1806 111 3e-22 seq10 98.7 2e-18 seq4755 80.6 5e-13 seq7114 73.4 7e-11 >seq7169 Length=826096 Score = 163 bits (180), Expect = 5e-38 Identities = 208/281 (74%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 540000 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 540059 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 540060 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 540118 Query 156 TCTATTTTGTTGGTTTCT----AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| | | || | | |||||||| ||||| | |||||| Sbjct 540119 TCTATTTTGTGGGTTTTTCTTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 540178 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 540179 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 540238 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||| ||||||| |||||||||| Sbjct 540239 GCATTTGCCAAGAATGTTTTCCTTAATCA-AGAACGAAAGT 540278 >seq6765 Length=2670 Score = 136 bits (150), Expect = 7e-30 Identities = 161/214 (75%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 708 ATGCTCTTAGCTGAGTGTCCCGTGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 649 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 648 TCAAAGCAGGCCCGGTCGCCTGAATACCACAGCTAGGAATAATGGAATAGGAC-TCCGGT 590 Query 156 TCTATTTTGTTGGTTTCT----AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| | | |||| | |||||||| ||||| | |||||| Sbjct 589 TCTATTTTGTGGGTTTTTCTTCTGAACCGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 530 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 | ||||| | |||||||||||||||||| Sbjct 529 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 496 >seq1806 Length=52364 Score = 111 bits (122), Expect = 3e-22 Identities = 156/214 (73%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| | | | | | | ||||||||||| ||||||| ||| Sbjct 4668 ATGCTCTTAGCTGAGTGTCCCGCTGGGTCCGAAGCGTTTACTTTGAAGAAATTAG--TGT 4611 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 4610 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 4552 Query 156 TCTATTTTGTTGGTTTCT----AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| | | |||| | |||||||| ||||| | |||||| Sbjct 4551 TCTATTTTGTGGGTTTTTCTTCTGAACCGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 4492 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 | ||||| | |||||||| ||||||||| Sbjct 4491 TTCGTATTGTGCCGCTAGAGGTGAGATTCTTGGA 4458 >seq10 Length=27390870 Score = 98.7 bits (108), Expect = 2e-18 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT-TTCTAGGACCGCCGTAATGAT 190 |||| || ||||||||| | |||||||||||||| ||| |||| | || | | |||| Sbjct 24486828 GAATGATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTCTTCT-GAACTGGGGCCTTGAT 24486771 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||||| | ||||| || |||||||||||||||||| Sbjct 24486770 TAAGAGGGACGGCCGGGGGCATTCGTATTGTGATGCTAGAGGTGAAATTCTTGGACCGGC 24486711 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| || | |||||||| || ||||| |||||||||||||||| Sbjct 24486710 GCAAGACGGACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA 24486661 >seq4755 Length=5308 Score = 80.6 bits (88), Expect = 5e-13 Identities = 111/153 (73%), Gaps = 7/153 (5%) Strand=Plus/Minus Query 99 CAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || |||||| ||| |||||||| ||||||||| | ||||| Sbjct 849 CAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 791 Query 157 CTATTTTGTTGGTTTCT----AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||| ||||| | | |||| | |||||||| ||||| | |||||| | Sbjct 790 CTATTTTGTGGGTTTTTCTTCTGAACCGGGGCCATGATTAAGAGGGACGGCCGGGGGCAT 731 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||||| | |||||||| ||||||||| Sbjct 730 TCGTATTGTGCCGCTAGAGGTGAGATTCTTGGA 698 >seq7114 Length=726640 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 282195 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 282136 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 282135 TCAAAGCAGGCC 282124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915134206272