Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryzias_20latipes_20[refseq_20GCF_5F000313675.1_202007-05-09] 7,189 sequences; 869,818,208 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq7169 188 1e-45 seq5063 188 1e-45 seq9 188 1e-45 seq18 86.0 1e-14 >seq7169 Length=826096 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 540676 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 540733 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 540734 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGATCAGCGTGTGTCTAC 540793 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| ||||||| | | || | | ||||| | ||||| | | | || Sbjct 540794 CCTGCGCCGAGAGGCGTGGGTAACCCGCTGAACCCCACTCGTGATAGGGATTGGGGACTG 540853 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 540854 CAATTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 540913 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 540914 AAGTCCCTGCCCTTTGTA 540931 >seq5063 Length=4665 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1574 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 1631 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 1632 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGATCAGCGTGTGTCTAC 1691 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| ||||||| | | || | | ||||| | ||||| | | | || Sbjct 1692 CCTGCGCCGAGAGGCGTGGGTAACCCGCTGAACCCCACTCGTGATAGGGATTGGGGACTG 1751 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 1752 CAATTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 1811 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1812 AAGTCCCTGCCCTTTGTA 1829 >seq9 Length=33261919 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 15806599 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 15806656 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 15806657 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGATCAGCGTGTGTCTAC 15806716 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| ||||||| | | || | | ||||| | ||||| | | | || Sbjct 15806717 CCTGCGCCGAGAGGCGTGGGTAACCCGCTGAACCCCACTCGTGATAGGGATTGGGGACTG 15806776 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 15806777 CAATTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 15806836 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 15806837 AAGTCCCTGCCCTTTGTA 15806854 >seq18 Length=31847347 Score = 86.0 bits (94), Expect = 1e-14 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| |||||||||||||||||||||||||||||| | |||| | |||| ||| | Sbjct 27129258 AAGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGGACGCACGCCA 27129316 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 |||||| | || | || | ||| || | || ||||||| | | ||||| Sbjct 27129317 CACTGAGTGGATCAGTGTGTGTCTACCCTGCGCTGATAGACGTGGGTAA-CCCGCTAAAC 27129375 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGA 270 | || || | ||||| | | | |||||||||| | | ||||||| Sbjct 27129376 CCACTCATGATAGGGATTGGGAACTGCAATTATTTCCCATCAACGA 27129421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947131905792