Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 190 2e-43
seq12009 109 4e-19
seq171131 107 2e-18
>seq285305
Length=1559
Score = 190 bits (210), Expect = 2e-43
Identities = 381/562 (68%), Gaps = 2/562 (0%)
Strand=Plus/Minus
Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073
|| || || || ||||| || | ||| || | ||| || || || || || |||||
Sbjct 1165 GACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTCAACTATCTCTGTGCAG 1106
Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133
||||||||||| |||||||| | |||||| || || ||||| | ||||| || ||
Sbjct 1105 AGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 1046
Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193
||||| | ||||||||| || ||||| || ||||||||||| ||||| | ||| |
Sbjct 1045 TTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACC 986
Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGT 66253
| ||||||||| || || | || | | || || | ||||||
Sbjct 985 TGCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGCC 926
Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313
|| || || ||||| ||| ||| | ||||||| | ||||||||||| |||
Sbjct 925 TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGAC 866
Query 66314 CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAG 66373
|| || | ||| || | ||| || || || || ||||| ||| |||||||
Sbjct 865 CAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAA 806
Query 66374 AGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432
|| || | |||| ||||||||| |||| ||| || || || || | ||| || ||
Sbjct 805 AGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTG-TTCTTCTTCAGCTCCAAGAAATCGAA 747
Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492
| || |||||| || |||||||| |||||||| | || | ||| ||| ||
Sbjct 746 CACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCC 687
Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552
||||||||||| || || |||||| | || | || ||| || ||||||||||||||
Sbjct 686 CTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTTAGA 627
Query 66553 TTTGCCATTGGTGCCGTCGATG 66574
||||| |||||||| |||||
Sbjct 626 GTTGCCGTTGGTGCCAGCGATG 605
>seq12009
Length=4249
Score = 109 bits (120), Expect = 4e-19
Identities = 120/160 (75%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| | || |||||||||||||| ||| | ||||| |||| |||||| ||
Sbjct 3095 GGTGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTG 3036
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| | ||||| || |||||||| | |||||| || ||||| || || ||
Sbjct 3035 GTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTG 2976
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208
||||| |||||||||||||| || | |||||||||
Sbjct 2975 TGACTCGATGATGGCGTGCCACAGTTGCTGAGCCTTCACC 2936
>seq171131
Length=971
Score = 107 bits (118), Expect = 2e-18
Identities = 91/112 (81%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| | ||||| ||||| ||| ||||||| | |||||||| || |||||||
Sbjct 860 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACGGAGGCCAGATGTTTCTATGGTTTCCAGA 919
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTA 61367
| ||||||||||| ||||||| ||||||||||| | |||||||| || ||
Sbjct 920 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTCATCGACACCTA 971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396123409214960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |