Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq285305 190 2e-43 seq12009 109 4e-19 seq171131 107 2e-18 >seq285305 Length=1559 Score = 190 bits (210), Expect = 2e-43 Identities = 381/562 (68%), Gaps = 2/562 (0%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || || || ||||| || | ||| || | ||| || || || || || ||||| Sbjct 1165 GACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTCAACTATCTCTGTGCAG 1106 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 ||||||||||| |||||||| | |||||| || || ||||| | ||||| || || Sbjct 1105 AGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 1046 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | ||||||||| || ||||| || ||||||||||| ||||| | ||| | Sbjct 1045 TTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACC 986 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGT 66253 | ||||||||| || || | || | | || || | |||||| Sbjct 985 TGCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGCC 926 Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313 || || || ||||| ||| ||| | ||||||| | ||||||||||| ||| Sbjct 925 TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGAC 866 Query 66314 CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAG 66373 || || | ||| || | ||| || || || || ||||| ||| ||||||| Sbjct 865 CAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAA 806 Query 66374 AGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 || || | |||| ||||||||| |||| ||| || || || || | ||| || || Sbjct 805 AGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTG-TTCTTCTTCAGCTCCAAGAAATCGAA 747 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 | || |||||| || |||||||| |||||||| | || | ||| ||| || Sbjct 746 CACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCC 687 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 ||||||||||| || || |||||| | || | || ||| || |||||||||||||| Sbjct 686 CTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTTAGA 627 Query 66553 TTTGCCATTGGTGCCGTCGATG 66574 ||||| |||||||| ||||| Sbjct 626 GTTGCCGTTGGTGCCAGCGATG 605 >seq12009 Length=4249 Score = 109 bits (120), Expect = 4e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| | || |||||||||||||| ||| | ||||| |||| |||||| || Sbjct 3095 GGTGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTG 3036 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| || |||||||| | |||||| || ||||| || || || Sbjct 3035 GTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTG 2976 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||| |||||||||||||| || | ||||||||| Sbjct 2975 TGACTCGATGATGGCGTGCCACAGTTGCTGAGCCTTCACC 2936 >seq171131 Length=971 Score = 107 bits (118), Expect = 2e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| ||||||| | |||||||| || ||||||| Sbjct 860 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACGGAGGCCAGATGTTTCTATGGTTTCCAGA 919 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTA 61367 | ||||||||||| ||||||| ||||||||||| | |||||||| || || Sbjct 920 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTCATCGACACCTA 971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396123409214960