Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq7925 277 5e-72 seq5 217 4e-54 seq32 118 3e-24 seq27 114 4e-23 seq4 95.1 4e-17 seq23 93.3 1e-16 >seq7925 Length=1426 Score = 277 bits (306), Expect = 5e-72 Identities = 232/282 (82%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 1023 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 964 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| | Sbjct 963 TCCCCGAGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGGAGCAAT 904 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||||| Sbjct 903 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCAGTTACCCGTGGTCACCATGGT 844 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | |||||| ||||||| |||||||||| ||| |||||| | |||||| | Sbjct 843 AGGCACAAAAAGTACCATTGAAAGTTTATAGGGCAGACATTCGAATGAGACGTCGCCGCC 784 Query 240 TCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA 279 | ||| | || ||| | | | ||||| || ||||||| Sbjct 783 ACGAGGGCCAGCAATTAGCTCGAGGTTATCTAGAGTCACCAA 742 >seq5 Length=18874890 Score = 217 bits (240), Expect = 4e-54 Identities = 259/341 (76%), Gaps = 18/341 (5%) Strand=Plus/Plus Query 81 ATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGA 140 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8077179 ATTTGCACGTCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGA 8077238 Query 141 ATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CACTATCCTACCATCG 199 |||||||||| |||||||||||||||| | |||||||||||| ||| | |||||||| Sbjct 8077239 ATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAGGCACAC-AAATTACCATCG 8077297 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTT 259 |||||||| ||||| || ||| ||||| || || | ||||| | | ||| | | Sbjct 8077298 AAAGTTGACAGGGCTGACATTCAAATGAGATGTCACCACCACAAGGTCCAGTGATCAGCT 8077357 Query 260 --AAGTTATTATGAATCACCAA---GGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAA 314 ||||||| || ||||||| || ||||| |||| ||||||| ||| |||| Sbjct 8077358 CCAAGTTATCTAGACTCACCAAAGCGGCGCCCC-AAGG-----GGTTTTTGGTCTGATAA 8077411 Query 315 ATACACCCCTTCC--GAAGTCGGGGTT-TTTAGCAT-GTATTAGCTCTAGAATTACCACG 370 |||||| | | || || ||| | || || |||| | |||||||| ||||| |||| Sbjct 8077412 ATACACACGTCCCTGGAGGTCAGTATTAATTGGCATACTTTTAGCTCTGGAATTGCCACA 8077471 Query 371 GTTATCCATGTAGTAAG-GTACTATCAAATAAACGATAACT 410 || || | ||| | | | | |||||| |||| || ||| Sbjct 8077472 GTATTCAAAGTAACATGAGAGCCATCAAAGAAACCATGACT 8077512 >seq32 Length=5834312 Score = 118 bits (130), Expect = 3e-24 Identities = 90/105 (86%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||| |||||||||||||||||||||| |||||||||||||| | | ||||||| Sbjct 5292906 AAACCATAACTGATTTAATGAGCCATTTGCAGTTTCACTGTACCGGCCATGTGTACTTAG 5292965 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||| ||||||||||||||||| |||||| ||| Sbjct 5292966 ACTTGCATGGCTTAATTTTTGAGACAAGCATATG-CTACTGACAG 5293009 >seq27 Length=7721681 Score = 114 bits (126), Expect = 4e-23 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||||||||||||||||||||||||||||||| | | | ||||||||| |||||| Sbjct 5813988 CTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACTTGCATG 5813929 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||| ||||||| ||||||||||||| ||||||||| Sbjct 5813928 GCTAAATCTTTAAGACAAGCATATG-CTACTGGCA 5813895 >seq4 Length=20050102 Score = 95.1 bits (104), Expect = 4e-17 Identities = 79/94 (84%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 412 ATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA-GACATGCATGGC 470 ||||||||||||||| | |||||||||||| | | | |||||| ||| |||||||| Sbjct 3308791 ATTTAATGAGCCATTTGAAGTTTCACTGTACCGGCAGTGTGTACTTAAGACTTGCATGGC 3308850 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| | |||||| |||| Sbjct 3308851 TTAATCTTTGAGACAAGCAT-TTACTACTAGCAG 3308883 >seq23 Length=9639858 Score = 93.3 bits (102), Expect = 1e-16 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 6998364 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 6998423 Query 60 TCCCCGTGTCGGGATTGGGTAAT 82 |||||| ||||||| |||||||| Sbjct 6998424 TCCCCGAGTCGGGAGTGGGTAAT 6998446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510256134400