Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11038 217 1e-51 seq5499 120 2e-22 seq15624 102 6e-17 >seq11038 Length=78219 Score = 217 bits (240), Expect = 1e-51 Identities = 446/658 (68%), Gaps = 4/658 (1%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 |||||||| ||||| || ||||||| |||||||| ||||||||||||||||| || Sbjct 22827 GTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGG 22886 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 |||||||| | || || ||||| ||||||| |||||| || || || || || || Sbjct 22887 TTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGA 22946 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGC-GTGCCTTCACCGTACGTACCGCCCTACCTTT 66228 ||||| |||||||| | ||| | | || | ||||| ||| || | | ||||| | Sbjct 22947 GACTCGATGATGGCATACCACA-ACTGCTGAGCCTTGACCACCCGCTTCACTCTACCCTC 23005 Query 66229 GCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGG 66288 |||| || || |||||| | || || || ||||| || || | || Sbjct 23006 CTGTTCATATTGAGTGTAGAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGG 23065 Query 66289 ACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAG 66348 |||| || |||||||| ||||| || | | ||| || | ||| || || Sbjct 23066 GCACTCACTGGGGCACATCAGAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAG 23125 Query 66349 ATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGAT 66407 |||||| ||||| ||||| |||||||| || ||||| | |||||||| | || ||| | Sbjct 23126 ATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTG-T 23184 Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 | || || || ||||| ||||| | || |||||||| |||||||| ||||| | Sbjct 23185 TCTTCTTCAGCTCAAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAA 23244 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 | | ||| ||||| |||||||||||| |||||||| ||| |||||| | || | Sbjct 23245 AAGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTC 23304 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTG 66587 || |||||| || || || || || || ||||| || || | ||| ||| || Sbjct 23305 TCAGCATCGGCACAAGGCCATTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTG 23364 Query 66588 CCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT 66647 | ||| | ||| | |||||| || || || | || |||||| |||||| | Sbjct 23365 ATCTAATACAGCTAACTGCTACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATT 23424 Query 66648 CGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 | ||| | ||||| |||||| |||| |||| |||| ||| ||| |||| Sbjct 23425 GTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCA 23482 >seq5499 Length=1901 Score = 120 bits (132), Expect = 2e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||| |||||||| || |||||||||| || |||||||| ||||||| Sbjct 1527 TGGAGCGCTTCATGCAAGAGGTGCAGGTAACGGAGGCGCGCTGCTTCTACGGGTTCCAGA 1586 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | || |||||||| ||||||||||||||||||| | |||||||| || || |||| || Sbjct 1587 TCGCGATGGAGAACATCCACTCGGAGATGTACAGCCTGCTCATCGACACCTATATCAAGG 1646 Query 61376 A 61376 | Sbjct 1647 A 1647 >seq15624 Length=12484 Score = 102 bits (112), Expect = 6e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || || || ||||| || |||||||| || ||| | |||||||| | |||||| || Sbjct 11852 GTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAGATTCTGCTGG 11911 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | |||||||||||| ||||| | |||||| || || || ||||| || Sbjct 11912 TTGCTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTGT 11971 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||| ||||| | ||| || | ||||||||| Sbjct 11972 GACTCAATAATGGCATACCACAGCTGCTGGGCCTTCACC 12010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397341905811680