Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 158 5e-36
seq21970 154 6e-35
seq19439 125 3e-26
seq25088 107 8e-21
seq24190 91.5 6e-16
>seq12471
Length=235
Score = 158 bits (174), Expect = 5e-36
Identities = 129/157 (82%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 43 TCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATT 102
||| |||||||||||||||||| | || ||| |||||||| | || || |||||||||
Sbjct 1 TCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAATATG 60
Query 103 GGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGA 162
||| ||||||||||||| ||||||| | || ||||||||||||| |||||| |||||
Sbjct 61 GGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGA 120
Query 163 GAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||| |||||| | ||||||||| | |||||||||
Sbjct 121 GAGTCAAAAAGTGCTTGAAATTGTCGGGAGGGAAGCG 157
>seq21970
Length=5753
Score = 154 bits (170), Expect = 6e-35
Identities = 103/115 (90%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 3281 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 3340
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||||||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 3341 GGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 3395
Score = 131 bits (144), Expect = 7e-28
Identities = 125/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 2490 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 2549
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 2550 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 2609
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || |||||||| ||| | ||| || ||
Sbjct 2610 AGAGAGTTCAAGAGGACGTGAAACCGTTAAGAGGTAAACG 2649
>seq19439
Length=27721
Score = 125 bits (138), Expect = 3e-26
Identities = 98/116 (84%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT-GAAGCCAGAGGAAACTCTGGT 625
||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 27315 TGGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCCGAAGCCAGAGGAAACTCTGGT 27374
Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||||| |||||||| ||| | ||||| || | ||| || |||||||||||||
Sbjct 27375 GGAGGCCTGCAGCGGTCCTGACATGCAAGTCAGTTGTCCAACCTGGGTATAGGGGC 27430
Score = 95.1 bits (104), Expect = 5e-17
Identities = 90/114 (79%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
|||||||||||| ||| ||||| ||||||| | || ||| |||||||||||||||||
Sbjct 26639 TGGGACCCGAAAAATGATGAACCATGCCTGGGCAAGGAAAAGGCAGAGGAAACTCTGGTG 26698
Query 627 GAGGCTCGCAGCGGTTCTG-GCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
||||| ||||| || ||| |||||||||| | ||| | |||| ||||||
Sbjct 26699 GAGGCCTGCAGCAGTCCTGAATGTGCAAATCGGTTGTCCGAACTGGGCATAGGG 26752
>seq25088
Length=293934
Score = 107 bits (118), Expect = 8e-21
Identities = 100/126 (79%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 6286 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 6227
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||||||| || | ||||| ||||||| ||||| ||
Sbjct 6226 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTT-GAG 6168
Query 160 AGAGAG 165
||||||
Sbjct 6167 AGAGAG 6162
>seq24190
Length=2131
Score = 91.5 bits (100), Expect = 6e-16
Identities = 89/115 (77%), Gaps = 6/115 (5%)
Strand=Plus/Plus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
||||||| |||||||||||| |||| |||| |||| ||||||||||||||||||
Sbjct 1549 TGGGACCTGAAAGATGGTGAGCTATACCTGGGCAGGGCGAAGCCAGAGGAAACTCT---- 1604
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| ||||||||| || | ||||| || | ||| | |||||||||||||
Sbjct 1605 --GGCCCGCAGCGGTCCTAACATGCAAGTCAGTTGTCCGACCTGGGTATAGGGGC 1657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079441013000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |