Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12471 158 5e-36 seq21970 154 6e-35 seq19439 125 3e-26 seq25088 107 8e-21 seq24190 91.5 6e-16 >seq12471 Length=235 Score = 158 bits (174), Expect = 5e-36 Identities = 129/157 (82%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43 TCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATT 102 ||| |||||||||||||||||| | || ||| |||||||| | || || ||||||||| Sbjct 1 TCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAATATG 60 Query 103 GGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGA 162 ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| ||||| Sbjct 61 GGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGA 120 Query 163 GAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| | ||||||||| | ||||||||| Sbjct 121 GAGTCAAAAAGTGCTTGAAATTGTCGGGAGGGAAGCG 157 >seq21970 Length=5753 Score = 154 bits (170), Expect = 6e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 3281 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 3340 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 3341 GGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 3395 Score = 131 bits (144), Expect = 7e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 2490 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 2549 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 2550 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 2609 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||||| ||| | ||| || || Sbjct 2610 AGAGAGTTCAAGAGGACGTGAAACCGTTAAGAGGTAAACG 2649 >seq19439 Length=27721 Score = 125 bits (138), Expect = 3e-26 Identities = 98/116 (84%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT-GAAGCCAGAGGAAACTCTGGT 625 ||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 27315 TGGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCCGAAGCCAGAGGAAACTCTGGT 27374 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||| |||||||| ||| | ||||| || | ||| || ||||||||||||| Sbjct 27375 GGAGGCCTGCAGCGGTCCTGACATGCAAGTCAGTTGTCCAACCTGGGTATAGGGGC 27430 Score = 95.1 bits (104), Expect = 5e-17 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||| ||| ||||| ||||||| | || ||| ||||||||||||||||| Sbjct 26639 TGGGACCCGAAAAATGATGAACCATGCCTGGGCAAGGAAAAGGCAGAGGAAACTCTGGTG 26698 Query 627 GAGGCTCGCAGCGGTTCTG-GCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||| ||||| || ||| |||||||||| | ||| | |||| |||||| Sbjct 26699 GAGGCCTGCAGCAGTCCTGAATGTGCAAATCGGTTGTCCGAACTGGGCATAGGG 26752 >seq25088 Length=293934 Score = 107 bits (118), Expect = 8e-21 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 6286 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 6227 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| ||||| || Sbjct 6226 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTT-GAG 6168 Query 160 AGAGAG 165 |||||| Sbjct 6167 AGAGAG 6162 >seq24190 Length=2131 Score = 91.5 bits (100), Expect = 6e-16 Identities = 89/115 (77%), Gaps = 6/115 (5%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||| |||||||||||| |||| |||| |||| |||||||||||||||||| Sbjct 1549 TGGGACCTGAAAGATGGTGAGCTATACCTGGGCAGGGCGAAGCCAGAGGAAACTCT---- 1604 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| ||||||||| || | ||||| || | ||| | ||||||||||||| Sbjct 1605 --GGCCCGCAGCGGTCCTAACATGCAAGTCAGTTGTCCGACCTGGGTATAGGGGC 1657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079441013000