Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18889 192 5e-44 seq20084 111 1e-19 seq22773 102 6e-17 >seq18889 Length=1054283 Score = 192 bits (212), Expect = 5e-44 Identities = 571/876 (65%), Gaps = 6/876 (1%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 |||||||| ||||| || ||||||| |||||||| ||||||||||||||||| || Sbjct 964656 GTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGG 964715 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 |||||||| | || || ||||| ||||||| |||||| || || || || || || Sbjct 964716 TTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGA 964775 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTG 66229 ||||| |||||||| | ||| | | ||||| ||| || | | ||||| | Sbjct 964776 GACTCTATGATGGCATACCACACCTGCTGAGCCTTGACCACCCGCTTCACTCTACCCTCC 964835 Query 66230 CGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 |||| || || ||| || | || || || ||||| || || | || Sbjct 964836 TGTTCATATCGTGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGG 964895 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 |||| |||||||||| ||||| || | | ||| || | ||| || || Sbjct 964896 CACTCACTGGGACACATCAAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGG 964955 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATT 66408 ||||| ||||| ||||| |||||||| || || || | |||||||| | || ||| || Sbjct 964956 TCAGGGATCCATAGGGCATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTG-TT 965014 Query 66409 TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 || || || || || ||||| | || |||||||| |||| ||| ||||| || Sbjct 965015 CTTCTTCAGCTCAAGAAAGTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAA 965074 Query 66469 CGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACG 66528 | ||| ||||| |||||||||||| || ||||| || |||||| | || | Sbjct 965075 GGCACCCGGTCGTTTATTGCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACTCT 965134 Query 66529 CAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGC 66588 || |||||| || || || || || || ||||| || || | ||| |||| || Sbjct 965135 CAGCATCGGCACAAGACCATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTTGA 965194 Query 66589 CCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATC 66648 | ||| | ||| | |||||| || || || | || ||||| |||||| | Sbjct 965195 TCTAATACAGCTAACTGCTACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACATTG 965254 Query 66649 GGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--T 66706 || ||| | ||||| |||||| |||| |||| |||| ||| ||| |||| | Sbjct 965255 TTTCAGTGTGTCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCT 965314 Query 66707 GAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 | | || |||||| || ||| | || ||| || ||||| | || || || || Sbjct 965315 GGA--GAGCTGGGGTCTGTTAGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAAC 965372 Query 66767 TAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATC 66826 | | ||||| ||||| ||||| ||| | ||||| || | | || || Sbjct 965373 CACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCATCTATATCAGAGTTGTGGATT 965432 Query 66827 CCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGC 66886 |||| || || ||| || | || || || || || ||| | | ||||| | | Sbjct 965433 CCGACAGCTACTCTCATGAGCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTC 965492 Query 66887 ATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 | ||||| ||||| || || || || | |||||| Sbjct 965493 AGCAAGTAAGAGCGCTCTAGCGTTTTAAAGCCAAAG 965528 >seq20084 Length=15297 Score = 111 bits (122), Expect = 1e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||| |||||||| || |||||||||| || ||||| || ||||||| Sbjct 13233 TGGAGCGCTTCATGCAAGAGGTGCAGGTAACGGAGGCGCGCTGCTTCTATGGATTCCAGA 13174 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | || |||||||| ||||||| ||||||||||| | |||||||| || || |||| || Sbjct 13173 TCGCAATGGAGAACATCCACTCTGAGATGTACAGCCTGCTCATCGACACCTATATCAAGG 13114 Query 61376 A 61376 | Sbjct 13113 A 13113 >seq22773 Length=730387 Score = 102 bits (112), Expect = 6e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || || || ||||| || |||||||| || ||| | |||||||| | |||||| || Sbjct 300296 GTGTATTCTACAATCTCAGTGCACAGGTTGCTGGACTTGATGGTGCCTAGATTCTGCTGG 300355 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | |||||||||||| ||||| | |||||| || || || ||||| || Sbjct 300356 TTGCTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTGT 300415 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||| ||||| | ||| || | ||||||||| Sbjct 300416 GACTCAATAATGGCATACCACAGCTGCTGGGCCTTCACC 300454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||| ||||| |||||| ||||| || ||||| || || | || |||||||| |||| Sbjct 300720 TTCCACACGTTTCATAAAAAGATCTGGGATCCACAGAGCAAAAAACAGATCGCGGGCTCT 300779 Query 66388 TTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 |||||||| | || ||| ||||| ||||| ||||||||||| | || ||||| Sbjct 300780 CTGCTCCTCTTTACCAGTG-TTTTTCTTTAAGTCAAGGAACTCAAACACATCAAAATGCC 300838 Query 66447 ATGGTTCCAGGTAGA 66461 |||| || ||||||| Sbjct 300839 ATGGCTCGAGGTAGA 300853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397441729918400