Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq38686 156 6e-36 seq7239 156 6e-36 seq3046 156 6e-36 seq2745 113 7e-23 >seq38686 Length=40144 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 36587 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 36530 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | |||| || |||| | |||| ||||||| |||| | || Sbjct 36529 CTCGTTGATGGGAAACAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTT 36470 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| ||| | || || ||| || ||| |||||||||| Sbjct 36469 ACCCGCGCCTCTCGGCGCAGGGTAGGCACACGCTGATCCGCCCATTGTGGCGCGCGTGCA 36410 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 36409 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 36357 >seq7239 Length=34013 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 8542 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 8485 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | |||| || |||| | |||| ||||||| |||| | || Sbjct 8484 CTCGTTGATGGGAAACAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTT 8425 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| ||| | || || ||| || ||| |||||||||| Sbjct 8424 ACCCGCGCCTCTCGGCGCAGGGTAGGCACACGCTGATCCGCCCATTGTGGCGCGCGTGCA 8365 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 8364 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 8312 >seq3046 Length=121806 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 73802 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 73745 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | |||| || |||| | |||| ||||||| |||| | || Sbjct 73744 CTCGTTGATGGGAAACAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTT 73685 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| ||| | || || ||| || ||| |||||||||| Sbjct 73684 ACCCGCGCCTCTCGGCGCAGGGTAGGCACACGCTGATCCGCCCATTGTGGCGCGCGTGCA 73625 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 73624 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 73572 >seq2745 Length=56439 Score = 113 bits (124), Expect = 7e-23 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| | ||||||| |||| ||| Sbjct 36922 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCTGTGCTTACTGGGAA-TTC 36979 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||| | |||| || |||| | ||| ||||||| |||| | || Sbjct 36980 CTCGTTGATGGGAAACAGTTTCAATTGCCAGTCCTGATCACGAGCGGGGTTCAGCGGGTT 37039 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | || ||| |||| ||| | || | ||| || ||| |||||| ||| Sbjct 37040 ATACGCGCCTCTCGGTGCAGGGTAGGCACACACTGATCCGCCCATTGTGGCGCGCTTGCA 37099 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 37100 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 37137 Score = 113 bits (124), Expect = 7e-23 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| | ||||||| |||| ||| Sbjct 39593 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCTGTGCTTACTGGGAA-TTC 39650 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||| | |||| || |||| | ||| ||||||| |||| | || Sbjct 39651 CTCGTTGATGGGAAACAGTTTCAATTGCCAGTCCTGATCACGAGCGGGGTTCAGCGGGTT 39710 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | || ||| |||| ||| | || | ||| || ||| |||||| ||| Sbjct 39711 ATACGCGCCTCTCGGTGCAGGGTAGGCACACACTGATCCGCCCATTGTGGCGCGCTTGCA 39770 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 39771 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 39808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751467779755