Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq38686 93.3 2e-17 seq7239 93.3 2e-17 seq3046 93.3 2e-17 seq37533 75.2 6e-12 seq3615 75.2 6e-12 >seq38686 Length=40144 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 36057 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 35998 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 35997 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 35940 >seq7239 Length=34013 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 8012 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 7953 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 7952 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 7895 >seq3046 Length=121806 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 75947 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 75888 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 75887 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 75830 >seq37533 Length=4944 Score = 75.2 bits (82), Expect = 6e-12 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 ||||| |||| |||| | |||||||| ||||||||| |||||||||||||||||| Sbjct 973 ATAACGCCGCCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGAT 1032 Query 109 CGTCTTCGA 117 ||||||||| Sbjct 1033 CGTCTTCGA 1041 >seq3615 Length=149201 Score = 75.2 bits (82), Expect = 6e-12 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 ||||| |||| |||| | |||||||| ||||||||| |||||||||||||||||| Sbjct 82212 ATAACGCCGCCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGAT 82153 Query 109 CGTCTTCGA 117 ||||||||| Sbjct 82152 CGTCTTCGA 82144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278209321230