Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq38686 174 3e-41 seq37533 174 3e-41 seq7239 174 3e-41 seq3615 174 3e-41 seq19441 136 7e-30 >seq38686 Length=40144 Score = 174 bits (192), Expect = 3e-41 Identities = 218/291 (75%), Gaps = 16/291 (5%) Strand=Plus/Plus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-----GGAGCCAGGA-CTTTTACTTTGAAAAAA 88 ||| |||||||| ||||||||| |||| || ||| | | | ||||||||||||||| Sbjct 35645 CCGGATGCCCTTAACTGGGTGT-CCGGTCCTCGGGGCCCGAAGCGTTTACTTTGAAAAAA 35703 Query 89 TTAGAGTGTTCAAAGCAGG----CCTTTGC--TCGAATACATTAGCATGGAATAATAGAA 142 ||||||||||||||||||| || | || |||||| ||| |||||||| ||| Sbjct 35704 TTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCGCTGAATACCGCAGCTAGGAATAATGGAA 35763 Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATA 201 |||||| | |||||||||||||| ||||||| | | ||| | |||||| | ||||| Sbjct 35764 TAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTGAGAGGGACG 35822 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 | |||||| | ||||| | |||||||||||||||||| ||||| || Sbjct 35823 GCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC 35882 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 35883 GAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 35932 >seq37533 Length=4944 Score = 174 bits (192), Expect = 3e-41 Identities = 218/291 (75%), Gaps = 16/291 (5%) Strand=Plus/Minus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-----GGAGCCAGGA-CTTTTACTTTGAAAAAA 88 ||| |||||||| ||||||||| |||| || ||| | | | ||||||||||||||| Sbjct 1336 CCGGATGCCCTTAACTGGGTGT-CCGGTCCTCGGGGCCCGAAGCGTTTACTTTGAAAAAA 1278 Query 89 TTAGAGTGTTCAAAGCAGG----CCTTTGC--TCGAATACATTAGCATGGAATAATAGAA 142 ||||||||||||||||||| || | || |||||| ||| |||||||| ||| Sbjct 1277 TTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCGCTGAATACCGCAGCTAGGAATAATGGAA 1218 Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATA 201 |||||| | |||||||||||||| ||||||| | | ||| | |||||| | ||||| Sbjct 1217 TAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTGAGAGGGACG 1159 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 | |||||| | ||||| | |||||||||||||||||| ||||| || Sbjct 1158 GCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC 1099 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 1098 GAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1049 >seq7239 Length=34013 Score = 174 bits (192), Expect = 3e-41 Identities = 218/291 (75%), Gaps = 16/291 (5%) Strand=Plus/Plus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-----GGAGCCAGGA-CTTTTACTTTGAAAAAA 88 ||| |||||||| ||||||||| |||| || ||| | | | ||||||||||||||| Sbjct 7600 CCGGATGCCCTTAACTGGGTGT-CCGGTCCTCGGGGCCCGAAGCGTTTACTTTGAAAAAA 7658 Query 89 TTAGAGTGTTCAAAGCAGG----CCTTTGC--TCGAATACATTAGCATGGAATAATAGAA 142 ||||||||||||||||||| || | || |||||| ||| |||||||| ||| Sbjct 7659 TTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCGCTGAATACCGCAGCTAGGAATAATGGAA 7718 Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATA 201 |||||| | |||||||||||||| ||||||| | | ||| | |||||| | ||||| Sbjct 7719 TAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTGAGAGGGACG 7777 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 | |||||| | ||||| | |||||||||||||||||| ||||| || Sbjct 7778 GCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC 7837 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 7838 GAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 7887 >seq3615 Length=149201 Score = 174 bits (192), Expect = 3e-41 Identities = 218/291 (75%), Gaps = 16/291 (5%) Strand=Plus/Plus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-----GGAGCCAGGA-CTTTTACTTTGAAAAAA 88 ||| |||||||| ||||||||| |||| || ||| | | | ||||||||||||||| Sbjct 81849 CCGGATGCCCTTAACTGGGTGT-CCGGTCCTCGGGGCCCGAAGCGTTTACTTTGAAAAAA 81907 Query 89 TTAGAGTGTTCAAAGCAGG----CCTTTGC--TCGAATACATTAGCATGGAATAATAGAA 142 ||||||||||||||||||| || | || |||||| ||| |||||||| ||| Sbjct 81908 TTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCGCTGAATACCGCAGCTAGGAATAATGGAA 81967 Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATA 201 |||||| | |||||||||||||| ||||||| | | ||| | |||||| | ||||| Sbjct 81968 TAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTGAGAGGGACG 82026 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 | |||||| | ||||| | |||||||||||||||||| ||||| || Sbjct 82027 GCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC 82086 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 82087 GAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 82136 >seq19441 Length=91253 Score = 136 bits (150), Expect = 7e-30 Identities = 174/236 (74%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 84 AAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCG------AATACATTAGCATGGAATAA 137 |||||||||||||||||||||||||| ||| ||||| ||| ||||||| Sbjct 89971 AAAAATTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCACTGAATACCGCAGCTAGGAATAA 90030 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAG 196 | ||||||||| | |||||||||||||| ||||||| | ||| | | |||||| | || Sbjct 90031 TGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTGAGAG 90089 Query 197 GGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGA 256 ||| | |||||| | ||||| | |||||||||||||||||| |||| Sbjct 90090 GGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGA 90149 Query 257 CTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | || | |||||||| || ||||| |||||||||||||||| |||| ||||| Sbjct 90150 CGGACGAGAGCGAAAGCATTAGCCAAGAATGTTTTCATTAATCA-AGAACAAAAGT 90204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914531382336