Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq38686 152 2e-34 seq6328 131 7e-28 seq3046 127 9e-27 seq6719 105 3e-20 >seq38686 Length=40144 Score = 152 bits (168), Expect = 2e-34 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 38680 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTG 38739 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 38740 GAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 38796 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | || || ||||||| Sbjct 37882 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCCAAGGCTAAAT 37941 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 37942 ACCGTCACGAGACCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 38001 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 38002 AGAGAGTTCAACAGGGCGTGAAACCGTTAAGAGGTAAACG 38041 >seq6328 Length=71795 Score = 131 bits (144), Expect = 7e-28 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 13869 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTG 13928 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||| ||||||||| ||| ||||||| | ||||| | ||||||||||||| Sbjct 13929 GAGGCCCGCAGCGGTCCTGCTGTGCAAAACTGTCGTCCGACCTGGGTATAGGGGC 13983 >seq3046 Length=121806 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | || || ||||||| Sbjct 75097 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCCAAGGCTAAAT 75156 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 75157 ACCGTCACGAGACCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 75216 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 75217 AGAGAGTTCAACAGGGCGTGAAACCGTTAAGAGGTAAACG 75256 >seq6719 Length=31581 Score = 105 bits (116), Expect = 3e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||| | | || |||||||||||||||||| || Sbjct 29654 TGGTACCCGAAAGATGGTGAACTATGCCCGGGCAAGGCAAAGCCAGAGGAAACTCTGATG 29595 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||| ||||||||| ||| | ||||||| | ||| | ||||||| ||| Sbjct 29594 GAGGCCCGCAGCGGTCCTGATTTACAAATCGCTTGTCCGACCTGGGTATGGGG 29542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078432927350