Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq38686 230 4e-58 seq7239 230 4e-58 seq3046 230 4e-58 seq1791 131 3e-28 seq2745 104 4e-20 seq5611 87.8 3e-15 seq36903 77.0 5e-12 >seq38686 Length=40144 Score = 230 bits (254), Expect = 4e-58 Identities = 201/245 (82%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 36427 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 36369 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGTCG 135 | || | | ||||| | |||| | |||||||||||||| | | || ||| | | | Sbjct 36368 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGGGG 36310 Query 136 ATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | ||| |||||| | |||||||||||||||||||| ||||||||||||| Sbjct 36309 CCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 36250 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 36249 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 36190 Query 254 CTGTC 258 ||||| Sbjct 36189 CTGTC 36185 >seq7239 Length=34013 Score = 230 bits (254), Expect = 4e-58 Identities = 201/245 (82%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 8382 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 8324 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGTCG 135 | || | | ||||| | |||| | |||||||||||||| | | || ||| | | | Sbjct 8323 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGGGG 8265 Query 136 ATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | ||| |||||| | |||||||||||||||||||| ||||||||||||| Sbjct 8264 CCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 8205 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 8204 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 8145 Query 254 CTGTC 258 ||||| Sbjct 8144 CTGTC 8140 Score = 163 bits (180), Expect = 5e-38 Identities = 96/100 (96%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 8894 GTCTCGTTCGTTATCGGAATGAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 8835 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||||||||||||||||| Sbjct 8834 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 8795 >seq3046 Length=121806 Score = 230 bits (254), Expect = 4e-58 Identities = 201/245 (82%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 73642 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 73584 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGTCG 135 | || | | ||||| | |||| | |||||||||||||| | | || ||| | | | Sbjct 73583 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGGGG 73525 Query 136 ATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | ||| |||||| | |||||||||||||||||||| ||||||||||||| Sbjct 73524 CCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 73465 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 73464 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 73405 Query 254 CTGTC 258 ||||| Sbjct 73404 CTGTC 73400 >seq1791 Length=102510 Score = 131 bits (144), Expect = 3e-28 Identities = 181/248 (73%), Gaps = 13/248 (5%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| | ||| ||| ||| | ||||||||||||||||||||||||||||||| || Sbjct 7318 CATTGTGGTGCGTGTGGAACCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 7260 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || | | |||| |||| | || |||| ||||| | || ||| || Sbjct 7259 ATCTCGCGT-GGCTAAGCGCCATTTGTAACTCTGAGAAGGTGGATGCCGACCGC--TCCG 7203 Query 137 TGGGGC-TATT-----TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | || |||| ||||| | ||| |||| ||||| ||||| ||||| ||||| Sbjct 7202 GGCCGCGTATTCCAGTTAGCATGCCGGAGTCGCGTTTGTTATTGGAATGAACCAAACAAA 7143 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || ||||| |||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 7142 TCGCTCCA---ACTAAGAACGGCCATGCACCACCACCCACAGAATGGCGAAAGAGCTATC 7086 Query 251 AATCTGTC 258 ||| |||| Sbjct 7085 AATTTGTC 7078 >seq2745 Length=56439 Score = 104 bits (114), Expect = 4e-20 Identities = 173/244 (71%), Gaps = 37/244 (15%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||| ||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 37082 CATTGTGGCGCGCTTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 37140 Query 77 AACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 | || ||| ||| || | | || | |||||||||||||| | | || ||| || Sbjct 37141 ATCT--CATGTGGGTGAATGGCACTTGTCCCTCTAAGAAGTTGGACGCCGACC--GCTC- 37195 Query 136 ATGGGGCTATTTAGCAGGTTA-AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 ||||| || |||| || |||||| |||||||||| | ||| | Sbjct 37196 --AGGGCT-----GC--GTTACTAGTATCGTTCATTATCGGAAT---------ACATCGC 37237 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||| ||||||||||||| ||||| | |||||| ||||||| Sbjct 37238 TCCACCAACTAA----------GCACCACCACCCACAGAATTGAAAAAGAG-AATCAATC 37286 Query 255 TGTC 258 |||| Sbjct 37287 TGTC 37290 Score = 104 bits (114), Expect = 4e-20 Identities = 173/244 (71%), Gaps = 37/244 (15%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||| ||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 39753 CATTGTGGCGCGCTTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 39811 Query 77 AACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 | || ||| ||| || | | || | |||||||||||||| | | || ||| || Sbjct 39812 ATCT--CATGTGGGTGAATGGCACTTGTCCCTCTAAGAAGTTGGACGCCGACC--GCTC- 39866 Query 136 ATGGGGCTATTTAGCAGGTTA-AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 ||||| || |||| || |||||| |||||||||| | ||| | Sbjct 39867 --AGGGCT-----GC--GTTACTAGTATCGTTCATTATCGGAAT---------ACATCGC 39908 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||| ||||||||||||| ||||| | |||||| ||||||| Sbjct 39909 TCCACCAACTAA----------GCACCACCACCCACAGAATTGAAAAAGAG-AATCAATC 39957 Query 255 TGTC 258 |||| Sbjct 39958 TGTC 39961 >seq5611 Length=145604 Score = 87.8 bits (96), Expect = 3e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 87104 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGC 87052 >seq36903 Length=3078 Score = 77.0 bits (84), Expect = 5e-12 Identities = 73/91 (80%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 24 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 83 ||| | |||| |||| | |||||||||||||||||| ||||||||||| ||| | || Sbjct 2933 GCGTGTGTGCAGCCCCGGACATCTAAGGGCATCACAAACCTGTTATTG-CTCCCTC-TCG 2990 Query 84 ATTGGCTGGAAGCCAATAGTCCCTCTAAGAA 114 || |||| | |||| | ||||||||||||| Sbjct 2991 CTTAGCTGAACGCCACTTGTCCCTCTAAGAA 3021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796236073017