Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq16172 214 3e-53 seq5351 183 5e-44 seq2056 178 2e-42 seq2362 84.2 4e-14 >seq16172 Length=79929 Score = 214 bits (236), Expect = 3e-53 Identities = 163/192 (85%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT--CATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| | ||||| |||| |||| | ||||||||||||| ||||||||||| | Sbjct 43659 TACTGAGCAGGATTACTATTGCAACGACATTGACATCAGTAGGGTACAACTAACCTGTTT 43600 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || ||||||||| |||||||||||||||||| ||||||||||||| || |||||||| Sbjct 43599 CACGACGGTCTACACCCAGCTCACGTTCCCTTTTAGTGGGTGAACGATACAACGCTTGGT 43540 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct 43539 GAATTCTGCTTCACAGTGATAGGAAGAACCGACATCGAAGGATCAAAAAGCGACGTCTCT 43480 Query 179 ATGAACGCTTGG 190 ||||||||| || Sbjct 43479 ATGAACGCTAGG 43468 >seq5351 Length=116829 Score = 183 bits (202), Expect = 5e-44 Identities = 118/129 (91%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 || ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 53229 AGAAGGGTAAAACTGACCTGTCTCACGACGGTCTAAACCCAGCTCTCGTTCCCTATTAGT 53170 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||||||||||||||||| || |||||||||||| |||||||||||||||||||||| Sbjct 53169 GGGTGAACAATCCAACGTTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCG 53110 Query 156 AAGGATCAA 164 ||||||||| Sbjct 53109 AAGGATCAA 53101 >seq2056 Length=262961 Score = 178 bits (196), Expect = 2e-42 Identities = 136/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 184587 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCG 184646 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 |||||||||||||||||||||||||||||||||| |||||| || | ||| | | Sbjct 184647 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAG 184706 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | |||||||| ||||| | |||||| ||| ||| ||| Sbjct 184707 CCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCCGTACTCA 184747 >seq2362 Length=95184 Score = 84.2 bits (92), Expect = 4e-14 Identities = 124/176 (70%), Gaps = 10/176 (6%) Strand=Plus/Minus Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116 |||| | |||| || ||||||| |||||| | ||||||||||| ||| | ||||| Sbjct 80473 CTCACAATGGTCAAATCCCAGCTAACGTTCTGTTATAGTGGGTGAAAAATTAAGCGCTTG 80414 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 ||| ||| || ||||||||| ||||||| | || ||||||||| | Sbjct 80413 GTGAACACTGATT--------TAGGAAGAGTCGACATCAGTGAATTTAAAAGCAACATAA 80362 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 ||| | | |||| |||| ||||||||||| ||||||| ||||||| |||| Sbjct 80361 CTA--ATGGTTTGGTCGCCATTAGCCAGTTATCTATGTGGTATGTTTTCTGACACC 80308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853775800992