Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq38686 82.4 5e-14 seq7239 82.4 5e-14 seq3046 82.4 5e-14 seq2745 73.4 2e-11 >seq38686 Length=40144 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 36627 CTCACTAAACCACC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 36570 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 36569 TAAT-CAACGCGAGCT 36555 >seq7239 Length=34013 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 8582 CTCACTAAACCACC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 8525 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 8524 TAAT-CAACGCGAGCT 8510 >seq3046 Length=121806 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 73842 CTCACTAAACCACC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 73785 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 73784 TAAT-CAACGCGAGCT 73770 >seq2745 Length=56439 Score = 73.4 bits (80), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 8/81 (10%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGT-----GTACAAAGGGCAG 103 |||||||| ||| | || ||||||||| | ||||||||| || ||||||||||||| Sbjct 36877 CTCACTAAACCACT-CAATCGGTAGTA-GTGACGGGCGGTGTACTGTGTACAAAGGGCAG 36934 Query 104 GGACGTAATACAACGCAAGCT 124 |||| |||| ||||||||||| Sbjct 36935 GGACTTAAT-CAACGCAAGCT 36954 Score = 73.4 bits (80), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 8/81 (10%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGT-----GTACAAAGGGCAG 103 |||||||| ||| | || ||||||||| | ||||||||| || ||||||||||||| Sbjct 39548 CTCACTAAACCACT-CAATCGGTAGTA-GTGACGGGCGGTGTACTGTGTACAAAGGGCAG 39605 Query 104 GGACGTAATACAACGCAAGCT 124 |||| |||| ||||||||||| Sbjct 39606 GGACTTAAT-CAACGCAAGCT 39625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300593979260