Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq38686 100 3e-19 seq37533 100 3e-19 seq7239 100 3e-19 seq3615 100 3e-19 seq19441 82.4 8e-14 >seq38686 Length=40144 Score = 100 bits (110), Expect = 3e-19 Identities = 131/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG----CCTTTGC--TCGAATACATTAC 66 ||||||||||||||||||||| |||||||||||| || | || |||||| | Sbjct 35689 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCGCTGAATACCGCAG 35748 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | | Sbjct 35749 CTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCA 35807 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| | | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 35808 TGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 35866 >seq37533 Length=4944 Score = 100 bits (110), Expect = 3e-19 Identities = 131/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG----CCTTTGC--TCGAATACATTAC 66 ||||||||||||||||||||| |||||||||||| || | || |||||| | Sbjct 1292 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCGCTGAATACCGCAG 1233 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | | Sbjct 1232 CTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCA 1174 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| | | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 1173 TGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1115 >seq7239 Length=34013 Score = 100 bits (110), Expect = 3e-19 Identities = 131/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG----CCTTTGC--TCGAATACATTAC 66 ||||||||||||||||||||| |||||||||||| || | || |||||| | Sbjct 7644 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCGCTGAATACCGCAG 7703 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | | Sbjct 7704 CTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCA 7762 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| | | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 7763 TGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 7821 >seq3615 Length=149201 Score = 100 bits (110), Expect = 3e-19 Identities = 131/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG----CCTTTGC--TCGAATACATTAC 66 ||||||||||||||||||||| |||||||||||| || | || |||||| | Sbjct 81893 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCGCTGAATACCGCAG 81952 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | | Sbjct 81953 CTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCA 82011 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| | | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 82012 TGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 82070 >seq19441 Length=91253 Score = 82.4 bits (90), Expect = 8e-14 Identities = 121/169 (72%), Gaps = 7/169 (4%) Strand=Plus/Plus Query 23 AAAAATTAGAGCGTTCAAAGCAGG----CCTTTGC--TCGAATACATTACCATGGAATAA 76 ||||||||||| |||||||||||| || | || |||||| | | ||||||| Sbjct 89971 AAAAATTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCACTGAATACCGCAGCTAGGAATAA 90030 Query 77 TAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATAC 136 | ||||||||| | |||||||||||||| ||||||| | ||| | ||||| | | Sbjct 90031 TGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTGAGAG 90089 Query 137 GGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 90090 GGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 90138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511637637280