Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq38686 167 4e-39 seq7239 167 4e-39 seq3046 167 4e-39 seq2745 116 7e-24 >seq38686 Length=40144 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 36331 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 36388 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | | Sbjct 36389 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGCCTAC 36448 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 36449 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 36508 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || | || | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 36509 AAACTGTTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 36568 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 36569 AAGTCCCTGCCCTTTGTA 36586 >seq7239 Length=34013 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 8286 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 8343 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | | Sbjct 8344 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGCCTAC 8403 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 8404 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 8463 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || | || | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 8464 AAACTGTTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 8523 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 8524 AAGTCCCTGCCCTTTGTA 8541 >seq3046 Length=121806 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 73546 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 73603 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | | Sbjct 73604 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGCCTAC 73663 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 73664 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 73723 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || | || | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 73724 AAACTGTTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 73783 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 73784 AAGTCCCTGCCCTTTGTA 73801 >seq2745 Length=56439 Score = 116 bits (128), Expect = 7e-24 Identities = 183/259 (71%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | | | ||| | ||| || | ||| ||||||||||||||| Sbjct 37178 CTTCTTAGAGGGACAAGTGCCATTCACCCACATG--AGATGGAG-CAATAACAGGTCTGT 37122 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| ||| |||||| ||| || | || | || | | Sbjct 37121 GATGCCCTTAGATGTCCGGGGCTGCAAGCGCGCCACAATGGGCGGATCAGTGTGTGCCTA 37062 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||| ||| | ||| | | || | | ||||| | ||| | ||| Sbjct 37061 CCCTGCACCGAGAGGCGCGTATAACCCGCTGAACCCCGCTCGTGATCAGGACTGGCAATT 37002 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | || | || | | |||||||||||| || ||||||| | ||||| ||| |||||||| Sbjct 37001 GAAACTGTTTCCCATCAACGAGGAATTCCCAGTAAGCACAGGTCATAAGCTTGCGTTGAT 36942 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 36941 TAAGTCCCTGCCCTTTGTA 36923 Score = 116 bits (128), Expect = 7e-24 Identities = 183/259 (71%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | | | ||| | ||| || | ||| ||||||||||||||| Sbjct 39849 CTTCTTAGAGGGACAAGTGCCATTCACCCACATG--AGATGGAG-CAATAACAGGTCTGT 39793 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| ||| |||||| ||| || | || | || | | Sbjct 39792 GATGCCCTTAGATGTCCGGGGCTGCAAGCGCGCCACAATGGGCGGATCAGTGTGTGCCTA 39733 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||| ||| | ||| | | || | | ||||| | ||| | ||| Sbjct 39732 CCCTGCACCGAGAGGCGCGTATAACCCGCTGAACCCCGCTCGTGATCAGGACTGGCAATT 39673 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | || | || | | |||||||||||| || ||||||| | ||||| ||| |||||||| Sbjct 39672 GAAACTGTTTCCCATCAACGAGGAATTCCCAGTAAGCACAGGTCATAAGCTTGCGTTGAT 39613 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 39612 TAAGTCCCTGCCCTTTGTA 39594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946508004096