Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq8573 239 1e-60 seq5313 199 1e-48 seq1552 145 2e-32 seq17139 143 9e-32 seq27938 141 3e-31 seq10748 132 2e-28 seq38729 118 3e-24 seq5557 118 3e-24 seq2056 113 1e-22 seq549 105 2e-20 seq31467 96.9 1e-17 >seq8573 Length=88765 Score = 239 bits (264), Expect = 1e-60 Identities = 141/147 (96%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 || || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 49315 GTAAATCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGT 49256 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| Sbjct 49255 GGTTTCGCTAGATAGCAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCA 49196 Query 406 CTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||| Sbjct 49195 CTAATTAGATGACGAGGCATTTGGCTA 49169 Score = 239 bits (264), Expect = 1e-60 Identities = 141/147 (96%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 || || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 86799 GTAAATCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGT 86740 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| Sbjct 86739 GGTTTCGCTAGATAGCAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCA 86680 Query 406 CTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||| Sbjct 86679 CTAATTAGATGACGAGGCATTTGGCTA 86653 >seq5313 Length=126872 Score = 199 bits (220), Expect = 1e-48 Identities = 317/447 (71%), Gaps = 41/447 (9%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||| || ||| |||||||| || | |||| | ||||| ||||| ||||||| Sbjct 42652 CTTTTGCTCCACGGGACATTTCTGTCCTTCCTGAGCTCGCCTTACGACACATGCGTTACC 42711 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||| ||||| | | || ||||||||||||||| || ||| || | || Sbjct 42712 GTTTAACAGGTGTGCAACTC-AGTCAAACTCCCCACCTGGCACTGT--TCCATGGGGCAG 42768 Query 127 GGCCCGCGAAGGACC---TTAACG--CCA-----GAAAATGGTCGGTGAAGACCAGTTCC 176 | | || | |||||| | | || ||| | || || |||| || || Sbjct 42769 GTCGCGTGGAGGACCAGGTGACCGGCCCACTCTCGCAATTGACTCCAGAAGTG-AGAGCC 42827 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG 236 | | ||||| |||||||||| |||||| | |||| | ||| | || Sbjct 42828 A----ACCGGGTAAGTGGGGAAACGATAAGAGTAGTGTTTTTTCCCATGC-----AGTGG 42878 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 | | || |||||| |||| ||| |||||| ||| ||| |||||||| Sbjct 42879 GTGC-----ATCATACACCCCTCATGTCTCTTCACAGTGTCAGAC-------AAGCTCAA 42926 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| ||||||||||| |||||||| |||||| | ||||||||||||||||||| |||| Sbjct 42927 CAGGTTCTTCTTTCCCTGCTGATTCTGCCAAGATCTTTCCCTTGGCTGTGGTTTCACTAG 42986 Query 357 ATAGTAGATAGGGACAGTGGGAATC----TCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||| || ||| ||||||||||||| || || || |||||||||| || || |||| Sbjct 42987 ATAGCAGGTAGTGACAGTGGGAATCCTATTCATTCATTAATTCATGCGCTTCGCT-ATTA 43045 Query 413 G-ATGACGAGGCATTTGGCTACCTTAA 438 | ||||||||||||||||||| ||||| Sbjct 43046 GAATGACGAGGCATTTGGCTAACTTAA 43072 >seq1552 Length=59326 Score = 145 bits (160), Expect = 2e-32 Identities = 91/98 (93%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 ||| ||||||||||||| ||||||||||||| ||||| | || |||||||||||||||| Sbjct 41666 TAAAAGAGTCATAGTTATTCCCGCCGTTTACTCGCGCATCATTAAATTTCTTCACTTTGA 41725 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||| Sbjct 41726 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 41763 >seq17139 Length=155592 Score = 143 bits (158), Expect = 9e-32 Identities = 92/99 (93%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 || ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 154698 CCATAAGAGAGTCATAGTTACTCCCGCCATTTACCCGCGCTTCCTTGAATTTCTTCACTT 154757 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||| |||||||| ||||||||||||| |||||||| Sbjct 154758 TGACATTTAGAGCACT-GGCAGAAATCACAATGCGTCAA 154795 >seq27938 Length=34307 Score = 141 bits (156), Expect = 3e-31 Identities = 92/100 (92%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||| ||| ||||||||||||||||||||||||| | |||| |||||||||||||| | Sbjct 24014 CCTTA-GAGGGTCATAGTTACTCCCGCCGTTTACCTGTGCTTCATTGAATTTCTTCACAT 24072 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||| ||||||||||||||||||||||||||||||||||| Sbjct 24073 TGACTTTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 24112 >seq10748 Length=58368 Score = 132 bits (146), Expect = 2e-28 Identities = 84/91 (92%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||||| Sbjct 57686 GTCATTGTTACTCCCACCGTTTATCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAG 57627 Query 503 AGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||| ||||||||||||||||| |||||| Sbjct 57626 AGCACTAGGCAGAAATCACATTGCATCAACA 57596 >seq38729 Length=5237 Score = 118 bits (130), Expect = 3e-24 Identities = 104/129 (81%), Gaps = 7/129 (5%) Strand=Plus/Plus Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 || |||||||| || | ||| ||| || ||||| ||||| |||| |||||||| Sbjct 4706 TAATCTACACCCCTTATGTCTCTTCGCA------GACTACAGTCAGGCTCTTCAGGGTCT 4759 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 |||||||| || |||| |||||||| ||||||||||||||||||||||||||||| | Sbjct 4760 TCTTTCCCGGCAAATTCTGCCAAGCC-GTTCCCTTGGCTGTGGTTTCGCTAGATAGCATG 4818 Query 365 TAGGGACAG 373 ||||||||| Sbjct 4819 TAGGGACAG 4827 Score = 107 bits (118), Expect = 6e-21 Identities = 114/151 (75%), Gaps = 11/151 (7%) Strand=Plus/Plus Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 || |||| | | |||| ||| |||||| | | ||||| |||||||| ||| ||| Sbjct 4836 TAATCTAAAGCCCTCATGTCTCTTCACAGTGCCAGACTACAGTCAAGC-----AGGATCT 4890 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||| ||| |||||| ||| ||||||||||||||| ||| |||| || Sbjct 4891 TCTTTCCCCGCTGGTTCTGCCAAGTTTGTTTTCTTGGCTGTGGTTTCACTATATAGCAGG 4950 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTC 395 ||||||| ||||||||| ||||||| Sbjct 4951 TAGGGAC------AATCTCGTTCGTCCATTC 4975 >seq5557 Length=82367 Score = 118 bits (130), Expect = 3e-24 Identities = 104/129 (81%), Gaps = 7/129 (5%) Strand=Plus/Plus Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 || |||||||| || | ||| ||| || ||||| ||||| |||| |||||||| Sbjct 68189 TAATCTACACCCCTTATGTCTCTTCGCA------GACTACAGTCAGGCTCTTCAGGGTCT 68242 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 |||||||| || |||| |||||||| ||||||||||||||||||||||||||||| | Sbjct 68243 TCTTTCCCGGCAAATTCTGCCAAGCC-GTTCCCTTGGCTGTGGTTTCGCTAGATAGCATG 68301 Query 365 TAGGGACAG 373 ||||||||| Sbjct 68302 TAGGGACAG 68310 Score = 107 bits (118), Expect = 6e-21 Identities = 114/151 (75%), Gaps = 11/151 (7%) Strand=Plus/Plus Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 || |||| | | |||| ||| |||||| | | ||||| |||||||| ||| ||| Sbjct 68319 TAATCTAAAGCCCTCATGTCTCTTCACAGTGCCAGACTACAGTCAAGC-----AGGATCT 68373 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||| ||| |||||| ||| ||||||||||||||| ||| |||| || Sbjct 68374 TCTTTCCCCGCTGGTTCTGCCAAGTTTGTTTTCTTGGCTGTGGTTTCACTATATAGCAGG 68433 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTC 395 ||||||| ||||||||| ||||||| Sbjct 68434 TAGGGAC------AATCTCGTTCGTCCATTC 68458 >seq2056 Length=262961 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 184312 CTTCTGCTCCTCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACA 184371 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 184372 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 184418 Score = 102 bits (112), Expect = 3e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 184780 CTTCTGCTCCTCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACA 184839 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||| |||| ||| ||||||||| |||||||||||||| Sbjct 184840 GTTTGACAGGTGTACCGCCCCAGTTAAACTCCCCACCTG 184878 >seq549 Length=310322 Score = 105 bits (116), Expect = 2e-20 Identities = 65/68 (96%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 370 ACAGT-GGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 185220 ACAGTTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 185279 Query 429 GCTACCTT 436 ||||| || Sbjct 185280 GCTACTTT 185287 Score = 82.4 bits (90), Expect = 2e-13 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 185331 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTT 185380 >seq31467 Length=4270 Score = 96.9 bits (106), Expect = 1e-17 Identities = 71/84 (85%), Gaps = 9/84 (11%) Strand=Plus/Minus Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 |||||||||| || |||||||||||||||||||||| |||||| ||||||| Sbjct 4270 CGCTAGATAGCAGGTAGGGACAGTGGGAATCTCGTTCATCCAT---------CCACTAAT 4220 Query 411 TAGATGACGAGGCATTTGGCTACC 434 |||||||||||||||||||||||| Sbjct 4219 TAGATGACGAGGCATTTGGCTACC 4196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634005371936