Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq11450 104 4e-20 seq16172 86.0 1e-14 seq3096 86.0 1e-14 seq7334 73.4 6e-11 >seq11450 Length=131703 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 95695 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 95752 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 95753 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 95806 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 98290 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 98347 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 98348 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 98401 >seq16172 Length=79929 Score = 86.0 bits (94), Expect = 1e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || ||||||||||||||||| |||||||| |||||||||||||| Sbjct 43691 TGGCTGAGGAGCCACTGGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAA 43750 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 43751 GTCAGAATCC 43760 >seq3096 Length=89063 Score = 86.0 bits (94), Expect = 1e-14 Identities = 95/122 (78%), Gaps = 11/122 (9%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTT-----TTGCG--GC--TGTCTGA 51 |||| ||||||||||| | |||||| | ||||| | ||||| || || |||| Sbjct 41463 GTACAAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTGAAGCTTGCGAAGCCTTGGCTGA 41406 Query 52 CCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAA 111 || || || |||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 41405 GGAGCCACTGGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAA 41346 Query 112 TC 113 || Sbjct 41345 TC 41344 >seq7334 Length=153900 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || || |||| || || | Sbjct 151879 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCCTGTTCTTGGCTGAGGAGCCACT 151822 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||| || |||||||| || ||| |||||||| ||||||| Sbjct 151821 TGTGCGAAGCTACCATCCGCGGGATTATGACTAAACACCTCTAAGGAAGAATCC 151768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818620219648