Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq19305 129 5e-25 seq10215 89.7 4e-13 seq9986 82.4 6e-11 >seq19305 Length=42216 Score = 129 bits (142), Expect = 5e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || || ||||||| |||||| | |||||||||| ||||| || Sbjct 24641 GGTGTACTCTACTATCTCTGTGCACAAGTTACTGGATTTGATGGTGCCCAGGTTCTGCTG 24700 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || |||||||||||||| ||||||||||| | |||||| || ||||||||||| || Sbjct 24701 GTTGCTCTTGCGATTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTCTGTCTG 24760 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| ||||| || Sbjct 24761 AGACTCAATGATGGCATGCCACAG 24784 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/132 (74%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| |||||||||||||| || ||||| | |||| || ||||| | Sbjct 25512 CATGAACAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGTTCCTCTTT 25571 Query 66400 GCC---GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAG 66456 || | |||||| || || ||||| ||||| ||||| |||||| || ||||| Sbjct 25572 TCCAGTATTCTTTTTGAGC---TCTAGGAAGTCAAAAATGTCAAAATGCCAGGGCTCCAG 25628 Query 66457 GTAGATGGCGAA 66468 ||| ||||| || Sbjct 25629 GTACATGGCAAA 25640 >seq10215 Length=77808 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || |||||||| | ||||||| || | ||||||||||| ||||| ||| |||||| Sbjct 34760 CAAGAGGTGCAGCTCCCGGAGGCTCGATCCTTCTACGGCTTTCAGATCCTCATCGAGAAT 34701 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| || |||||||| | |||||| | || ||||||||||| Sbjct 34700 GTGCACTCCGAAATGTACAGCATGCTCATCAACACCTACATCAGGGA 34654 >seq9986 Length=217236 Score = 82.4 bits (90), Expect = 6e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||| || |||||| | || || ||||| ||||| || ||||||||||| ||||| || Sbjct 84988 CAGGAAGTCCAAGTGACAGAAGCCCGTTGCTTCTATGGTTTCCAGATTGCAATGGAAAAC 85047 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | ||||| || |||||||| | | || ||||| ||||||| Sbjct 85048 ATTCACTCTGAAATGTACAGCCTGTTAATTGATACCTACATCA 85090 Score = 82.4 bits (90), Expect = 6e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||| || |||||| | || || ||||| ||||| || ||||||||||| ||||| || Sbjct 85863 CAGGAAGTCCAAGTGACAGAAGCCCGTTGCTTCTATGGTTTCCAGATTGCAATGGAAAAC 85922 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | ||||| || |||||||| | | || ||||| ||||||| Sbjct 85923 ATTCACTCTGAAATGTACAGCCTGTTAATTGATACCTACATCA 85965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397214012534480