Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2655 214 3e-53 seq1969 165 1e-38 seq2359 125 1e-26 seq1534 102 1e-19 >seq2655 Length=78278 Score = 214 bits (236), Expect = 3e-53 Identities = 191/234 (82%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 71757 TCCGCTCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 71698 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG--------CCAGCCA 122 || |||| || | | ||||| | |||| | |||||||||||||| || |||| Sbjct 71697 GC-TCAATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTAAGACGCCGGCCA 71640 Query 123 CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 |||| | | || | ||| || ||||| | ||||||||||||||||||||||| Sbjct 71639 CCAATCT--GCCGC-GTAACTAGTTGGCAGGCTGGAATCTCGTTCGTTATCGGAATTAAC 71583 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 71582 CAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATC 71529 >seq1969 Length=122428 Score = 165 bits (182), Expect = 1e-38 Identities = 157/197 (80%), Gaps = 14/197 (7%) Strand=Plus/Plus Query 58 CAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC 117 ||||||||||||||| |||| || | | ||||| | |||| | |||||||||||||| Sbjct 107206 CAGACCTGTTATTGC-TCAATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTT 107263 Query 118 AGCCACCAACCATAGTCGATGGGGC--------TATTTAGCAGGTTAAGGTCTCGTTCGT 169 | | || ||| | || ||||| || |||||| | ||||||||||| Sbjct 107264 GGACGCCGACCGCA--CG--GGGGCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGT 107319 Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 107320 TATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA 107379 Query 230 TAGAATCAAGAAAGAGC 246 |||||| ||||||||| Sbjct 107380 CAGAATCGAGAAAGAGC 107396 >seq2359 Length=133019 Score = 125 bits (138), Expect = 1e-26 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 38622 TCATTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCCCCA 38563 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATC 254 |||| |||||| ||| ||| || |||||| Sbjct 38562 CCCACAGAATCGAGACAGAACTTTCAATC 38534 >seq1534 Length=184825 Score = 102 bits (112), Expect = 1e-19 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 43177 ACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGT 43236 Query 258 C 258 | Sbjct 43237 C 43237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796661150628