Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_033168.1 Length=11270 Score E Sequences producing significant alignments: (Bits) Value seq1308 140 2e-29 seq681 134 1e-27 >seq1308 Length=193862 Score = 140 bits (154), Expect = 2e-29 Identities = 252/365 (69%), Gaps = 9/365 (2%) Strand=Plus/Minus Query 1856 TATAAGGGGTGGAAAGTGCTTTATGTTAATTTCGATGTTTCAGGGTGGTGTTCTAATTTC 1915 |||| || |||| |||| | || |||| ||| |||| || || |||||| || || Sbjct 106135 TATACCGGCTGGAGAGTGTTGTACATTAACTTCAATGTGTCGGGTTGGTGTGGCAACTTT 106076 Query 1916 AGACATGAAACTGTTCATCCCATAGCCCATGACATTTTGGATAAA-TATTATCAGACTGG 1974 |||||||| || || | |||||||| || ||| || | || ||| |||| | || Sbjct 106075 AGACATGAGACAGTAGAGCCCATAGCACACGACGTTCTAGACAAAGTATTCGGA-ACATC 106017 Query 1975 AGAtttttttGGAAAAACACAATTGGCATACGAACATGGGCTATTCTATATCCCTAAACA 2034 |||| |||| || || ||| |||| ||| | ||| | |||||| | ||| | | Sbjct 106016 TCATTTCTTTGACAAGACTCAAAAAGCATTCGAGAAAGGGTTCTTCTATCTACCTGACCG 105957 Query 2035 AGATGGATCAGGTGCTTACCACTGGGAAGGGCAGTTAGGGGGAGTGGAGGGGCTGAATCA 2094 || || || |||||||||||| |||||| || ||| | |||||| |||| || Sbjct 105956 GGAGGG------TGTTTACCACTGGGAGGGGCAGGATGGAGGAATAGAGGGGTTGAACCA 105903 Query 2095 AGATACATGGATGATGGTATACATACCACAGATGAGGTTAGCTCTACATGAAT-TTCAAG 2153 | || ||||||| || |||||||| |||||| | | ||||||| || | ||| Sbjct 105902 GTACACTTGGATGACCGTCTACATACCCCAGATGCAGCTGGCTCTACGGGAGTAATCAGT 105843 Query 2154 CACACATGTTTGTAATGGCTTATGGAGACGATTATAAGGCCGCTTTATTAATTCCGCCCG 2213 || | || |||||| |||||| || ||||||||||| || || | || || || | Sbjct 105842 TGCAATTCTTCGTAATGTGTTATGGGGATGATTATAAGGCGGCAATACTCATCCCACCGG 105783 Query 2214 ATCAG 2218 ||||| Sbjct 105782 ATCAG 105778 >seq681 Length=532227 Score = 134 bits (148), Expect = 1e-27 Identities = 311/464 (67%), Gaps = 20/464 (4%) Strand=Plus/Plus Query 2045 GGTGCTTACCACTGGGAAGGGCAGTTAGGGGGAGTGGAGGGGCTGAATCAAGATACATGG 2104 |||| || || |||||||| ||| || || | || ||| ||| ||| | || ||| Sbjct 283618 GGTGTCTATCATTGGGAAGGTCAGGACGGAGGCATAGAAGGGTTGAGCCAATACACCTGG 283677 Query 2105 ATGATGGTATACATACCACAGATGAGGTTAGCTCTACATGAATTTCAAGCACACATGTTT 2164 |||| || || ||||| || ||| |||||| ||| ||||||||| || | || Sbjct 283678 ATGACTGTCTATATACCCCAAATGCAGTTAGCCTTACGAGAATTTCAACTGCAGTTCTTC 283737 Query 2165 GTAATGGCTTATGGAGACGATTATAAGGCCGCTTTATTAATTCCGCCCGATCAGGCTAAT 2224 |||||| ||| || ||||| || ||||| || || | || || ||||| ||| Sbjct 283738 GTAATGTGTTACGGTGACGACTACAAGGCAGCAATACTCATACCTCCCGACCAG------ 283791 Query 2225 CGAGATATCACTACATTGAAGAACAAAATTATAGAGGTGGT----GAGTAACGTGGCACA 2280 |||||| | | |||| || | ||| | |||| | | | || | | | | | Sbjct 283792 CGAGATGTGA--ACATGGAGGTCTTAAAATCTAGAATAGTTTCGGGGGTCA-GCGAAAGA 283848 Query 2281 GACATGTTTTGCT-----CAAGATATGAAAGTTTTTGATAGTTATGGCTCAGAATGTTTC 2335 | | | || ||| ||| | |||||||| | |||||| || || ||||| | | Sbjct 283849 GTGAGGGTTAGCTTCGGGCAAAAGATGAAAGTGTATGATAGCTACGGATCAGAGGTGTAC 283908 Query 2336 ATAAGCTTTTGTAAAAATGCATCAGTCCGTGGAGTAGAACTATCACAAGGCTTTAGAAAG 2395 || || || || || ||||| || ||| | ||||| || | |||| || || | ||| Sbjct 283909 ATCAGTTTCTGCAAGAATGCGTCCGTCAGAGGAGTCGAGATGCCACAGGGAATTCGGAAG 283968 Query 2396 ATTCAAAAATGTTATGGGGCAAATAATGCTTTTCTTCC-ACATATAGATGATTACATCGC 2454 ||||| ||||||||||| || | ||||| || | || ||| | ||||| ||||| || Sbjct 283969 ATTCAGAAATGTTATGGTGCTACCAATGCCTTCTTACCGACA-CTCGATGACTACATTGC 284027 Query 2455 GTCTGCTTTCAGTAATTCTCACTCAGCATCCCGACACATGCCAG 2498 || ||||| |||||| | ||||| || | ||| |||| ||| Sbjct 284028 ATCAGCTTTTAGTAATGCACACTCTGCTGCACGATGCATGACAG 284071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35941525221088