Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3602 563 3e-158 seq2947 417 3e-114 seq2594 417 3e-114 seq2799 385 2e-104 seq3703 345 1e-92 seq12 125 2e-26 seq500 84.2 7e-14 >seq3602 Length=41555 Score = 563 bits (624), Expect = 3e-158 Identities = 449/534 (84%), Gaps = 16/534 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | |||| ||||||||||||| Sbjct 155 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGACTTAAGACACCTGCGTTACC 214 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| || |||||| ||||||||||||||| || |||| |||||| | Sbjct 215 GTTTGACAGGTGTACCACCCCAGTCAAACTCCCCACCTGCCACTGTC-----CCCGGAGC 269 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAA---AATGGTCGGTGAAGACCAG---TTCCGCTT 180 || ||| || ||| ||||||||| | | | | || | | | |||| | Sbjct 270 GGAT-GCGG-GGCGCTTGACGCCAGAACCGAGAGCCCACTACAGGCTCGCCCTCCCGCCT 327 Query 181 CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTC 239 || | ||||||||||||||||||| ||||||||||||||| ||| ||||| | ||| Sbjct 328 CACCGGATAAGTAAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGAAGC--CTC 385 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||| ||||||| |||| ||| ||||||| | | ||||||||||||||||||||| Sbjct 386 CCACTTATCCTACACCCCTCATGTCTCTTCACAATGGCAGACTAGAGTCAAGCTCAACAG 445 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 446 GGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATG 505 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 | || |||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 506 GGAGTTAGGTACAGTGGGAATCTCGTTCATCCATTCATGTGCGTCACTAATTAGATGACG 565 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 566 AGGCATTTGCCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTG 625 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 626 AATTTCTTCACCTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 679 >seq2947 Length=64572 Score = 417 bits (462), Expect = 3e-114 Identities = 361/443 (81%), Gaps = 16/443 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 54487 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 54428 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 54427 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGGTC 54368 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAA---AATGGTCGGTGAAGACCAG---T 173 || |||| || | ||| ||||||||| | | | | || | | | Sbjct 54367 ACGCCCCGCACGCGCGGGGCGCTTGACGCCAGAACCGAGAGCCCACTACAGGCTCGCCCT 54308 Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAA 232 |||| ||| | ||||| ||||||||||||| ||||||||||||||| ||| ||||| Sbjct 54307 CCCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGAA 54248 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | ||||||||||| |||||||||||| ||| ||||||| | | |||||||||||||| Sbjct 54247 GC--CTCCCACTTATCCTACACCTCTCATGTCTCTTCACAATGCCAGACTAGAGTCAAGC 54190 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 54189 TCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 54130 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 || ||| | || |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 54129 CTGGATGGGAGTTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTA 54070 Query 413 GATGACGAGGCATTTGGCTACCT 435 |||||||||||||||||||| || Sbjct 54069 GATGACGAGGCATTTGGCTAACT 54047 >seq2594 Length=100498 Score = 417 bits (462), Expect = 3e-114 Identities = 381/474 (80%), Gaps = 19/474 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 21445 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 21504 Query 67 GTTTAACAG--ATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGA 124 |||| |||| | || |||||| ||||||||||||||| || |||| | ||| Sbjct 21505 GTTTGACAGTCAAACACCACCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGG 21564 Query 125 TCG------GCCCGCGAAGGAC-CTTAACGCCAGAA---AATGGTCGGTGAAGACCAG-- 172 || || |||| || | ||| ||||||||| | | | | || | | Sbjct 21565 TCACGCCCCGCACGCGCGGGGCGCTTGACGCCAGAACCGAGAGCCCACTACAGGCTCGCC 21624 Query 173 -TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCG 230 | |||| ||| | ||||| ||||||||||||| ||||||||||||||| ||| ||| Sbjct 21625 CTCCCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCG 21684 Query 231 AAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 || | ||||||||||| |||||||||||| ||| ||||||| | | |||||||||||| Sbjct 21685 AAGC--CTCCCACTTATCCTACACCTCTCATGTCTCTTCACAATGCCAGACTAGAGTCAA 21742 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 21743 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTT 21802 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 |||| ||| | || |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 21803 CGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAAT 21862 Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC-CCGCCGTT 463 |||||||||||||||||||||| ||||| ||||||| ||| ||| | |||||| Sbjct 21863 TAGATGACGAGGCATTTGGCTAGTTTAAGGGAGTCATCGTTGCTCTCTGCCGTT 21916 Score = 159 bits (176), Expect = 1e-36 Identities = 93/96 (97%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 24526 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 24585 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||| ||||||||| Sbjct 24586 TTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 24621 Score = 80.6 bits (88), Expect = 9e-13 Identities = 58/66 (88%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC-CC 457 ||||||||||||| |||||||||||||||||||| ||||| | ||||| ||| ||| || Sbjct 48606 CGCGTCACTAATTTGATGACGAGGCATTTGGCTATTTTAAGGGGGTCATTGTTGCTCTCC 48665 Query 458 GCCGTT 463 |||||| Sbjct 48666 GCCGTT 48671 >seq2799 Length=75330 Score = 385 bits (426), Expect = 2e-104 Identities = 352/440 (80%), Gaps = 16/440 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 66358 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 66417 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 66418 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGGTC 66477 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAA---AATGGTCGGTGAAGACCAGTTCC 176 || |||| || | ||| ||||||||| | | | | || | | || Sbjct 66478 ACGCCCCGCACGCGCGGGGCGCTTGACGCCAGAACCGAGAGCCCACTACAGGCTCGCCCC 66537 Query 177 ---GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAA 232 || ||| | ||||| ||||||||||||| ||||||||||||||| ||| ||||| Sbjct 66538 CCCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGAA 66597 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | |||||||||||||| || |||||| | | |||| || | | |||||||||||||| Sbjct 66598 GC--CTCCCACTTATTCTTCAACTCTCATGACTCTTCATAATGCCAGACTAGAGTCAAGC 66655 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 66656 TCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCT 66715 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 || ||| | || ||||||||| |||||| ||||| ||||||||||||||||||||||||| Sbjct 66716 CTGGATGGGAGTTAGGGACAGGGGGAATGTCGTTCATCCATTCATGCGCGTCACTAATTA 66775 Query 413 GATGACGAGGCATTTGGCTA 432 |||||||||||||||||||| Sbjct 66776 GATGACGAGGCATTTGGCTA 66795 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 75203 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 75262 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 75263 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 75303 >seq3703 Length=77674 Score = 345 bits (382), Expect = 1e-92 Identities = 226/247 (91%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTA 246 ||||| ||||||||||||| ||||||||||||||| ||| ||||| | |||||||||| Sbjct 44816 TAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGAAGC--CTCCCACTTA 44759 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 | |||||||||||| ||| ||||||| | | |||||||||||||||||||||||||||| Sbjct 44758 TCCTACACCTCTCATGTCTCTTCACAATGCCAGACTAGAGTCAAGCTCAACAGGGTCTTC 44699 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| | || || Sbjct 44698 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTA 44639 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 44638 GGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 44579 Query 427 TGGCTAC 433 ||||||| Sbjct 44578 TGGCTAC 44572 Score = 159 bits (176), Expect = 1e-36 Identities = 93/96 (97%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 39686 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 39627 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||| ||||||||| Sbjct 39626 TTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 39591 >seq12 Length=943295 Score = 125 bits (138), Expect = 2e-26 Identities = 174/240 (73%), Gaps = 14/240 (6%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 616812 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 616871 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT- 125 |||| |||| ||| |||| |||| ||||||||||||||| || |||| | ||| | Sbjct 616872 GTTTGACAGGTGTACCGCGCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGGTC 616931 Query 126 -----CGGCCCGCGAAGGAC-CTTAACGCCAGAA---AATGGTCGGTGAAGAC---CAGT 173 | || |||| || | ||| ||||||||| | | | | || | | | Sbjct 616932 ACGCCCCGCACGCGCGGGGCGCTTGACGCCAGAACCGAGAGCCCACTACAGGCTCGCCCT 616991 Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAA 232 |||| ||| | ||||| ||||||||||||| ||||||||||||||| || |||||| Sbjct 616992 CCCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGAA 617051 >seq500 Length=332782 Score = 84.2 bits (92), Expect = 7e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 176473 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAATT 176521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634903947040