Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2 306 6e-81 seq13 268 2e-69 seq4 221 2e-55 seq22 219 7e-55 seq6 217 3e-54 seq5 217 3e-54 seq23 158 2e-36 seq25 152 9e-35 seq9 143 5e-32 seq20 114 2e-23 seq18 89.7 9e-16 seq14 77.0 6e-12 seq21 75.2 2e-11 >seq2 Length=46286544 Score = 306 bits (338), Expect = 6e-81 Identities = 189/202 (94%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||| Sbjct 25827053 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGYCWAA-CCCAGCTCACGTTCCCTATT 25826995 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 25826994 AGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA 25826935 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 25826934 TCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCT 25826875 Query 213 GTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||| |||||| Sbjct 25826874 GTGGTAACTTTTCTGACACCTC 25826853 >seq13 Length=33524197 Score = 268 bits (296), Expect = 2e-69 Identities = 182/203 (90%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| | || || | |||||||||||||||| ||| Sbjct 9166060 ATCAGTAGGGTAAAACTAACCTGTCTCACAATGGCCTGATCCCAGCTCACGTTCCCCATT 9166119 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 9166120 AGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA 9166179 Query 153 TCGAAGGATC-AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || ||||||| ||||||| ||||| |||||||||| |||| ||||||||||||||||||| Sbjct 9166180 TCAAAGGATCAAAAAAGCGACGTCACTATGAACGCCTGGCCGCCACAAGCCAGTTATCCC 9166239 Query 212 TGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||| ||| || Sbjct 9166240 TGTGGTAACTTTTCTGACACTTC 9166262 Score = 257 bits (284), Expect = 3e-66 Identities = 156/165 (95%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 100 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 8727334 GGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 8727275 Query 101 AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 8727274 AACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGA 8727215 Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 ||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8727214 TCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGT 8727170 Score = 80.6 bits (88), Expect = 5e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||| | |||||||||||||| |||||| |||||||||||||||||||||| Sbjct 11022856 AATTCTGCTTAGCAATGATAGGAAGAGCTGACATCACAGGATCAAAAAGCAACGTCGCT 11022914 >seq4 Length=31497199 Score = 221 bits (244), Expect = 2e-55 Identities = 165/192 (86%), Gaps = 11/192 (6%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACT----AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88 ||||||||||||||||| ||||||| ||||||| |||||| ||||| | |||||||| Sbjct 218714 ATCAGTAGGGTAAAACTAACTAACCTGTGTCATGACAGTCTAATCCCAGTTTACGTTCCC 218773 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 ||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||| Sbjct 218774 TATTAGTGGCTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCC 218833 Query 149 GACATCGAAGGATC-AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||| Sbjct 218834 AACATCAAAGGATCAAAAAAGCGACGTCGCTATGAACGCTTGGCTGC------CCAGTTA 218887 Query 208 TCCCTGTGGTAA 219 |||||||||||| Sbjct 218888 TCCCTGTGGTAA 218899 Score = 93.3 bits (102), Expect = 7e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || | ||||||| |||||||||||||||| | Sbjct 16676885 TACTGAGCAGGATTACTATTGCAACAACACATTATCAGTAAAGTAAAACTAACCTGTCAC 16676944 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 100 | ||| ||||||||||||||| ||||||| ||||||||||| Sbjct 16676945 ACGACAGTCTAAACCCAGCTCGCGTTCCCCATTAGTGGGTG 16676985 >seq22 Length=25248790 Score = 219 bits (242), Expect = 7e-55 Identities = 168/202 (83%), Gaps = 19/202 (9%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||| |||||||||||||||| || Sbjct 9739635 ATCAGTAGGGTAAAACTAACCTGTC----------------CCAGCTCACGTTCCCTTTT 9739678 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||| |||| ||||| |||||| |||||||||| |||||||| Sbjct 9739679 AGTGGGTGAACAATCCAACACTTAGTGAATTTTGCTTCACAATGATAGGAAAAGCCGACA 9739738 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||| Sbjct 9739739 TCGAAGGATCAAAAAGCGACGTTGCTATGAACGCTTGGCTGCCACAAGACAGTTGTCC-- 9739796 Query 213 GTGGTAACTTTTCTGGCACCTC 234 |||||||||| ||| |||||| Sbjct 9739797 -TGGTAACTTTCCTGACACCTC 9739817 Score = 154 bits (170), Expect = 3e-35 Identities = 121/143 (85%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| | Sbjct 3347503 ATCAGTAGGGTAAAACTAACTTGTCTCACGACGGCCTAAACCCAGCTCACGTTCCCTA-T 3347561 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | | ||||||||||||||||||| ||||||||||| ||||| |||||||| |||| Sbjct 3347562 AATTGGTGAACAATCCAACGCTTGGTGAATTCTGCTTGACAATGATGGGAAGAGCTGACA 3347621 Query 153 TCGAAGGATCAAAAAGCAACGTC 175 || || |||||| || || || Sbjct 3347622 TC---GGGTCAAAAGGCGACATC 3347641 Score = 75.2 bits (82), Expect = 2e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 |||||| ||||| || || ||||||| ||||||| ||||| |||||||||||||| Sbjct 2210831 GGATCAGAAAGCTGTGTTGCCATGAACGTTTGGCTGAGTAAAGCCGGTTATCCCTGTGGT 2210772 Query 218 AACTTTTCTGGCACCT 233 ||||||||| ||||| Sbjct 2210771 AACTTTTCTAACACCT 2210756 >seq6 Length=31529174 Score = 217 bits (240), Expect = 3e-54 Identities = 160/187 (86%), Gaps = 12/187 (6%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| || Sbjct 4279827 ATCAGTAGGGTAAGACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCTGTT 4279886 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||||||| |||||||| ||| ||||| |||||| ||| Sbjct 4279887 AGTGGGTGAACAATCCAACGCTTGGTGAATTCTGTTTCACAATGAT----AGAGCCAACA 4279942 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 || |||||||||||||| |||||||||||||| |||||||||||||||| ||| Sbjct 4279943 TCAAAGGATCAAAAAGCGACGTCGCTATGAAC--------GCCACAAGCCAGTTATTCCT 4279994 Query 213 GTGGTAA 219 ||||||| Sbjct 4279995 GTGGTAA 4280001 Score = 131 bits (144), Expect = 3e-28 Identities = 89/99 (90%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| |||| ||||||||||||||||| ||||||||||||| |||||| |||||||| Sbjct 893878 TCATCAGCAGGG-AAAACTAACCTGTCTCACGACGGTCTAAACCAAGCTCAGGTTCCCTA 893936 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||| ||||||||||||||||| ||||||||||| Sbjct 893937 CTAGTGGCTGAACAATCCAACGCTTGGTGAATTCTGCTT 893975 >seq5 Length=33908744 Score = 217 bits (240), Expect = 3e-54 Identities = 150/170 (88%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 |||||| ||| |||||||||||||||||||| ||||||| |||||||||| |||||| Sbjct 32931120 GGTCTACCCCCGGCTCACGTTCCCTATTAGTGTGTGAACATTCCAACGCTTGGTGAATTC 32931061 Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 32931060 TGCTTCACAATGGCAGGAAGAGCCGACACTGAAGGATCAAAAAGCAACGTCGCTATGAAC 32931001 Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||||| |||||||||||||||| |||||||||| ||||||| ||| || Sbjct 32931000 GCTTGGCCGCCACAAGCCAGTTATTCCTGTGGTAATTTTTCTGACACATC 32930951 >seq23 Length=18084596 Score = 158 bits (174), Expect = 2e-36 Identities = 141/176 (80%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 17729825 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTGGCT 17729884 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||| ||||||||| |||||||||||||||| | |||||||||||||| ||||| || Sbjct 17729885 ATGGACGCTTGGCCGCCACAAGCCAGTTAT--ATCTGGTAACTTTTCTGATACCTCCTGC 17729942 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||| | ||||| |||||| ||| |||||||| Sbjct 17729943 TTAAAACCCAAAAAGTCAGAAGGATTGTGAGGCCCTGCTTTCACGGTCTGTATTCA 17729998 >seq25 Length=1457224 Score = 152 bits (168), Expect = 9e-35 Identities = 106/120 (88%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 415468 AACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 415409 Query 106 TCCAACGCT----TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 ||||||||| | || | ||||||| |||| ||||||||||||||||||||||| Sbjct 415408 TCCAACGCTTGGATTCCTATCACTGCTTCACAATGACAGGAAGAGCCGACATCGAAGGAT 415349 >seq9 Length=34117797 Score = 143 bits (158), Expect = 5e-32 Identities = 106/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 |||||||||||||| | || |||||||||||||| ||||||||||||||| ||| ||||| Sbjct 18618955 GTAGGGTAAAACTAGCTTGCCTCATGACGGTCTACACCCAGCTCACGTTCTCTAATAGTG 18618896 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 |||||||||||||| |||| |||| |||||| |||||||||| |||| ||||| | Sbjct 18618895 GGTGAACAATCCAATGCTTGGTAAATTGTGCTTCACAATGATAGGAAAAGCCAACATCAA 18618836 Query 157 AGGA 160 |||| Sbjct 18618835 AGGA 18618832 Score = 73.4 bits (80), Expect = 7e-11 Identities = 62/75 (83%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || | ||||||||||||||||||||||||||| Sbjct 31621958 TACTGAGCAGGATTACTATTGCAACAACACATTATCAGTAGGGTAAAACTAACCTGTCTC 31621899 Query 60 ATGACGGTCTAAACC 74 | ||||||||||||| Sbjct 31621898 ACGACGGTCTAAACC 31621884 >seq20 Length=26385442 Score = 114 bits (126), Expect = 2e-23 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||||| | Sbjct 6435362 ATCAGTAGGGTAAAACTAACCTGTTTCACGACAGTCTAAACCCAACTCACGTTCCCCGTC 6435421 Query 93 AGTGGGTGAACAATCCAACGCTT 115 |||||||||||||||||| |||| Sbjct 6435422 AGTGGGTGAACAATCCAAAGCTT 6435444 >seq18 Length=22026651 Score = 89.7 bits (98), Expect = 9e-16 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 ||||||||||||||||| ||||||| | ||||||||||||||||||||||| |||||| Sbjct 4503622 GGTCTAAACCCAGCTCAAGTTCCCTGT-AGTGGGTGAACAATCCAACGCTTGGTGAATTC 4503564 Query 125 TGCTTCGGT 133 |||||| || Sbjct 4503563 TGCTTCTGT 4503555 >seq14 Length=28338960 Score = 77.0 bits (84), Expect = 6e-12 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAG 77 |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 10569648 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAG 10569604 >seq21 Length=25773841 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 7/100 (7%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC---CCTAT 91 || || ||||||||||||||||||||||||| | |||||||| || | |||| || | Sbjct 19905505 CATTATGGTAAAACTAACCTGTCTCATGACGATGTAAACCCACCTAAAGTTCAATACTGT 19905446 Query 92 TAGTGGGTGAACAATC-CAACGCTTACCGAATTCTGCTTC 130 ||| ||| |||||| |||| || |||||||||||| Sbjct 19905445 TAGCGGG---ACAATCAAAACGATTTGTGAATTCTGCTTC 19905409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854376350208