Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq6 104 4e-20 seq10 102 1e-19 seq20 100 5e-19 seq18 98.7 2e-18 seq9 96.9 6e-18 seq22 95.1 2e-17 >seq6 Length=31529174 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 5618577 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 5618520 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 5618519 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 5618466 >seq10 Length=32819797 Score = 102 bits (112), Expect = 1e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 19480823 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 19480880 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct 19480881 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGARTCC 19480934 >seq20 Length=26385442 Score = 100 bits (110), Expect = 5e-19 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||| | || | || |||| || || | Sbjct 14121351 GTACGAGAGGAACCGCAGG-TTCAGAC-RTTTGGTGTATGTGCTTGGCTGAGGAGCCART 14121408 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||| |||| |||||||| |||||||||||||||||||||||| Sbjct 14121409 GGGGCGAAGCTACCRTCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 14121462 >seq18 Length=22026651 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 20290744 GTACRAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGYATGTGCTTGGCTGAGGAGCCAAT 20290687 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 20290686 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 20290633 >seq9 Length=34117797 Score = 96.9 bits (106), Expect = 6e-18 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | |||||| | |||| || | || |||| || || | Sbjct 31621956 GTACRAGAGGAACCGCAGG-TTCAGAC-ATTTGGYGYATGTGCTTGGCTGAGGAGCCAAT 31622013 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 31622014 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 31622067 >seq22 Length=25248790 Score = 95.1 bits (104), Expect = 2e-17 Identities = 94/119 (79%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||||| | ||||| | || | || ||| || || | Sbjct 23537490 GTACGAGAGGAACCGCAGG-YTCAGAC-ATTTGGTGTATGTGCTTGGCTGWGGAGCCAAT 23537547 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||||||||||| |||||||| ||||||||||| |||||||||||| |||| Sbjct 23537548 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCCAAGTCAGAATCC-TGCC 23537605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819178033152