Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq22 228 2e-57 seq16 136 1e-29 seq20 123 8e-26 seq17 120 9e-25 seq13 118 3e-24 seq1 87.8 5e-15 seq2 77.0 1e-11 >seq22 Length=25248790 Score = 228 bits (252), Expect = 2e-57 Identities = 186/228 (82%), Gaps = 14/228 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| |||| || ||||| | |||||||| Sbjct 4098845 GTACTCATTCCAATTACAGGGCCTAGAAAGAGTCCTGYATTGTTATTTTTCATCACTACC 4098904 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 4098905 TCCCCGAGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTGGGATGTGGTAGCCGT 4098964 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 || || ||||||||||||||||| ||||||| |||||| ||||||||| Sbjct 4098965 TTTTCTGGCTCCCTCTCCGGAATTGAACCCTGATTCCCTGTTACCCGT------------ 4099012 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || ||||||| ||||||||||||||||| ||| |||||| Sbjct 4099013 -GGCACGTAGTGTACCATCAAAAGTTGATAGGGCAGACATTCGAATGA 4099059 >seq16 Length=33199742 Score = 136 bits (150), Expect = 1e-29 Identities = 156/204 (76%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||| || Sbjct 29675756 AATTTGCAC--CTGCTGCCTTCCTTTGATGTGGTAGCCGTTTCGCAGGCTCCCTCTCTGG 29675813 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 ||||||| || ||||||| ||| |||| | | || ||| || ||||||| Sbjct 29675814 AATCGAATCCCAATTCCCTCTTA-CCGTGGTCATAATAGTATATACGTAGAGTACCATCC 29675872 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC--AAGGCCATGCGATTCG 257 ||||||||||||||||| ||| |||||| | |||||| | | | ||||| ||||| | Sbjct 29675873 AAAGTTGATAGGGCAGACATTCGAATGAGACGTCGCCGCCACGGAGGGCCA-GCGATCGG 29675931 Query 258 TT--AAGTTATTATGAATCACCAA 279 | | ||||| || ||||||| Sbjct 29675932 CTCGAGGTTATCTAGACTCACCAA 29675955 Score = 122 bits (134), Expect = 3e-25 Identities = 89/102 (87%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||||||||||||||||||||||||||||||||||| | | |||||||| Sbjct 29591431 AACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCAGCCGTGTGTACTTAGA 29591372 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 | ||||||||||||||| ||||||||||||||| |||||||| Sbjct 29591371 CTTGCATGGCTTAATCTCTGAGACAAGCATATG-CTACTGGC 29591331 Score = 96.9 bits (106), Expect = 1e-17 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||||||||||||||||||||||||||||||||||| | | | |||||| | Sbjct 29562254 AACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTACA 29562313 Query 461 CATGCATGGCTTAATCTTTGA 481 | ||||||||||||||||||| Sbjct 29562314 CTTGCATGGCTTAATCTTTGA 29562334 >seq20 Length=26385442 Score = 123 bits (136), Expect = 8e-26 Identities = 87/98 (89%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 |||||||||||||||||||||||||||||||||||| | | | ||||||||| ||| Sbjct 8500510 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACTTGC 8500451 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||| ||||||||| ||||||||| Sbjct 8500450 ATGGCTTAATCTTTGAGAAAAGCATATG-CTACTGGCA 8500414 >seq17 Length=30788009 Score = 120 bits (132), Expect = 9e-25 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||||| ||||||||||||||||||||||||||||||||||||| | | | |||||| Sbjct 5662898 TAAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTA 5662839 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCA 489 ||||||||| ||||||||||||||||||||| Sbjct 5662838 GACATGCATTGCTTAATCTTTGAGACAAGCA 5662808 >seq13 Length=33524197 Score = 118 bits (130), Expect = 3e-24 Identities = 87/100 (87%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||||||||| ||||||||| ||| || | | | ||||||||| || Sbjct 22707668 ATAACTGATTTAATGAGCCACTCGCAGTTTGACTATACTGGCCGTGTGTACTTAGACTTG 22707727 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| |||||||||| Sbjct 22707728 CATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 22707766 >seq1 Length=34115677 Score = 87.8 bits (96), Expect = 5e-15 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTATACT 456 |||| ||||||||||||||||||||||||||||||||||| | | || | |||| Sbjct 12825280 TAAATCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGCACCGGCCGTGTGTTTACT 12825221 Query 457 TAGACATGCATGGCTTAATCTT 478 ||||| |||||||||||||||| Sbjct 12825220 TAGACTTGCATGGCTTAATCTT 12825199 >seq2 Length=46286544 Score = 77.0 bits (84), Expect = 1e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTA 473 ||| |||||||||||||||||||||||| | | ||||||||||||||||||||| Sbjct 18661260 TTATTGAGCCATTCGCAGTTTCACTGTACCRGCCGTGTGTACTTAGACATGCATGGCTTA 18661201 Query 474 ATCTTT 479 |||||| Sbjct 18661200 ATCTTT 18661195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510358192128