Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq13 241 1e-58 seq21 132 4e-26 >seq13 Length=33524197 Score = 241 bits (266), Expect = 1e-58 Identities = 986/1525 (65%), Gaps = 57/1525 (4%) Strand=Plus/Minus Query 65416 GTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGT 65475 |||| | |||| | |||||||| |||||||| || | ||| ||||||||| || Sbjct 17856134 GTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGT 17856075 Query 65476 GATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGG 65535 | | || | ||| || ||||||| || || ||||| || || || || |||||||| Sbjct 17856074 GTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGG 17856015 Query 65536 AGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCA 65595 || | || || ||| | || || | | | || || | || | ||| Sbjct 17856014 CGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCA 17855955 Query 65596 GTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGAT 65655 || ||||| ||| ||| || | || | ||||| || | || || | || | Sbjct 17855954 GTCCCACA--GGTCGGTCGGCGTCTTCTCC----CACATGTCGTACTGGAGAATGCCCTT 17855901 Query 65656 ACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT 65715 ||| | || || || | | | ||||| || ||| ||| || | ||||| Sbjct 17855900 GCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCT 17855841 Query 65716 GGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTC 65775 || ||| || ||||| || ||||||||||| || | || || | || || Sbjct 17855840 GGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTC 17855781 Query 65776 ATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAAT 65835 ||| ||| |||| | |||||||| || | |||||||||||| || || || || Sbjct 17855780 GGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGAT 17855721 Query 65836 ACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCT-CAGGTACAGGGTAGTAATTGA 65894 ||||| || | |||||| ||||| ||||||| || |||| || |||||||| |||| Sbjct 17855720 CCCGATCGGCCTGTGACGCTTGTTGGA-CGTCTCGGCTTCAGGGACCGGGTAGTAGTTGA 17855662 Query 65895 TATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGAT-ACGTCG--CAATTGTT 65951 | ||||| || || | || | |||| | | | | ||| | || | | Sbjct 17855661 TGTCGATGATCTTGTTGAGGTT---TTTCACGATTACCTTGGTGACGGAGGCCAGCTTCT 17855605 Query 65952 CGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAA 66011 ||| || ||| | || || || ||| || ||| ||| ||||| | Sbjct 17855604 TGAAGTCGAAA------GTCCGCTCTGGCGTGACGTACATG------TTG---AGGGCGA 17855560 Query 66012 GAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGC 66071 || || ||||||||||| || | ||| || ||| ||||| || | || |||| Sbjct 17855559 TGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTGC 17855500 Query 66072 ACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCAT 66131 | ||||| ||||| || ||||||| |||| || || ||||| | ||||| || | Sbjct 17855499 AGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGT 17855440 Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191 ||||||| | |||||| || || ||||| || |||||||| |||||||||| ||| Sbjct 17855439 CCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCA-- 17855382 Query 66192 GAGC-GC-GTGCCTTCACCGTACGTAC--CGCCCTACCTTTGCGTTCGTAA-TGTTCGTA 66246 |||| || | ||||| ||| || | | | |||| |||| || || || | ||| Sbjct 17855381 GAGCTGCTGCGCCTTTACC--ACCTTCTTCACCCTCCCTTCCTTCTCATATCTGGT-GTA 17855325 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 ||| | ||||| || ||||| ||| || | ||||||| | |||||||| Sbjct 17855324 GAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCTAGCCCAGGACACTCGCTGGGACACAT 17855265 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATCCAGAGG 66364 || ||||| || | || ||| ||| ||| || || ||||| ||||| | | Sbjct 17855264 CAAGGACCAGTCCTGGT--TGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAG 17855207 Query 66365 GCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAG 66423 |||||||| ||||| | |||| |||||||| | || ||| || || || || || Sbjct 17855206 GCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAG 17855148 Query 66424 GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTT 66483 ||| || || | |||| ||||| || |||||||| |||||||| | || | || Sbjct 17855147 GAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTT 17855088 Query 66484 GCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAG 66543 | ||| || ||||||||||||||||| |||||| | || | || |||||| || | Sbjct 17855087 GTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAA 17855028 Query 66544 CCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAA 66602 ||||| || ||||| ||||||||| ||||| | ||| ||| | || || | | Sbjct 17855027 TCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCC-CGTCGATCGGATGCAGCTCA 17854969 Query 66603 CATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGA 66662 | || || || || || || | ||| || ||| ||| || | || || Sbjct 17854968 CCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCAT 17854909 Query 66663 ATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGTTGGGG 66720 | ||||| || ||| ||| |||| |||| || ||| |||| || || || || || Sbjct 17854908 AGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC--AGCTGCGG 17854851 Query 66721 TTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACAT 66780 | || |||| ||||||||| || | ||||| || || | | |||| Sbjct 17854850 CCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAG 17854791 Query 66781 GTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATC 66839 | ||||| ||||||||| | || || |||| | || || ||||| | || ||| | Sbjct 17854790 GAGGTTGTAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACAC-CC 17854732 Query 66840 GCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC--TTGATATGCATTAAGTAGGA 66897 ||| || | || || ||||| ||| ||| | ||| ||||| | || | |||||| Sbjct 17854731 TCATGAGCATGTGCTGCGGCCGCTCGGCCA--CTTTCCCGTTGATCTTCAGCAGGTAGGA 17854674 Query 66898 GCGTTCCAGGGTCTTGATACCAAAG 66922 ||| ||||| ||||||| || ||| Sbjct 17854673 GCGCTCCAGAGTCTTGAAGCCGAAG 17854649 >seq21 Length=25773841 Score = 132 bits (146), Expect = 4e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||||||||||| ||| ||||||| | ||||||||||||||||||| Sbjct 1860403 TGGAGCGCTTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCAGA 1860462 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | |||||| | || ||||||| || Sbjct 1860463 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTCATCAACACCTACATCAAGG 1860522 Query 61376 A 61376 | Sbjct 1860523 A 1860523 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || ||||| || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 1859119 GAAAACCCTCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 1859178 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || |||||||||||||||| |||||||| Sbjct 1859179 AAGAAGGCAGAGGCTTCCTTCTGGACGGCAGAGGAGGT 1859216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 61490 GATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCT 61549 || || |||| || || | || ||||| | || ||| ||| ||||| ||||| |||| Sbjct 1860787 GAGTGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCT 1860846 Query 61550 TTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCAC 61609 | ||| ||||||| | || || |||||||| |||||||||||||| ||| | || | Sbjct 1860847 TCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCC 1860906 Query 61610 GCGACGAGG 61618 | ||||||| Sbjct 1860907 GAGACGAGG 1860915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554588043520