Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq392608 268 2e-69
seq337199 149 1e-33
seq337200 147 4e-33
seq362979 109 1e-21
seq257960 102 2e-19
>seq392608
Length=818
Score = 268 bits (296), Expect = 2e-69
Identities = 257/324 (79%), Gaps = 4/324 (1%)
Strand=Plus/Plus
Query 14 GGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTG 73
|| |||||||||| |||||| || ||| ||||||||||||||||| | | ||||
Sbjct 139 GGAGTGAAATAGATCCTGAAACCATACGCTTACAAGCGGTCGGAGCCCTTTAGTGGGGTG 198
Query 74 ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCT 133
||||||||||||||||||||||||||||||||||| ||| | || ||| |||| | |
Sbjct 199 ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTA-ACGTTGCTGGCAAGGATAAGTGGT 257
Query 134 TCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCG-ACGAGTTGGTGGCGCTA 192
| || | || | ||| || ||||||||| || || |||||| ||| || | | ||
Sbjct 258 TAAGCCACG-GATCCGTAGCGAAAGCGAGTCTGAATAGGGCGCTTTAGTCAGTAGTGTTA 316
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAG 252
||||||||||| ||||||||||||| | |||||||||| |||||| | |||||
Sbjct 317 GACGCGAAACCGTGTGATCTACCCATGGACAGGTTGAAGCTTTGGTAACACAAAGTGGAG 376
Query 253 GACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCA 312
||||||||| || |||||||||||| || |||||| | |||||||||||||||||||
Sbjct 377 GACCGAACC-GTTGACGTTGAAAAGTCTTGGGATGATCTGTGGGTAGGGGTGAAAGGCCA 435
Query 313 ATCAAACTGGGAAATAGCTCGTAC 336
|||||||| |||||||||||||||
Sbjct 436 ATCAAACTCGGAAATAGCTCGTAC 459
>seq337199
Length=308
Score = 149 bits (164), Expect = 1e-33
Identities = 163/217 (75%), Gaps = 5/217 (2%)
Strand=Plus/Minus
Query 118 AGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC 177
||||||||||| | || || |||||| || |||| |||| |||||| ||||||
Sbjct 280 AGCGAGGTTAACCGATTAGGG-----TAGCCGTAGGGAAACCGAGTCTTAACTGGGCGAA 226
Query 178 GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237
||||| | ||||| ||||||| |||||||| ||| ||||||||||||| |
Sbjct 225 TAGTTGCAAGGTATAGACCCGAAACCCGGTGATCTAGCCATGAGCAGGTTGAAGGTTGAG 166
Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297
|||| |||||||||||||| |||||||||||||| |||||||| | || |
Sbjct 165 TAACATCAACTGGAGGACCGAACCCACTAACGTTGAAAAGTTAGGGGATGACTTGTGGTT 106
Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
||| ||||||||| |||||||| |||| |||||| ||
Sbjct 105 AGGAGTGAAAGGCTAATCAAACCGGGAGATAGCTGGT 69
>seq337200
Length=248
Score = 147 bits (162), Expect = 4e-33
Identities = 141/181 (78%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 154 GAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTA 213
|||| |||| |||||| |||||| ||||| ||| ||||| |||||||| ||||||||
Sbjct 246 GAAACCGAGTCTTAACTGGGCGAATAGTTGCTGGGATTAGACCCGAAACCTGGTGATCTA 187
Query 214 CCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGA 273
||| | ||||||||||| ||||| ||||||||||||||| || |||||
Sbjct 186 GCCATGGGCAGGTTGAAGGTTGAGTAACATCAACTGGAGGACCGAACCGACTAATGTTGA 127
Query 274 AAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCG 333
||| || ||||||||| | || | ||||||||||||||||||||| ||| |||||| |
Sbjct 126 AAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCCGGAGATAGCTGG 67
Query 334 T 334
|
Sbjct 66 T 66
>seq362979
Length=304
Score = 109 bits (120), Expect = 1e-21
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204
||||| || ||||||||| ||||| |||||| ||||| || ||||| |||||||
Sbjct 255 AGCCGTAGCGAAAGCGAGTCTTAATAGGGCGTTTAGTTGCAGGGTATAGACCCGAAACCG 196
Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGT 264
| |||||| ||| | ||||||||||| ||||| |||||||||||||
Sbjct 195 GGCGATCTATCCATGGGCAGGTTGAAGGTTGAGTAACATCAACTGGAGGACCGAACACAC 136
Query 265 AAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGA 324
| |||||||| | ||||||| | |||| || ||||||||| |||||| | ||||
Sbjct 135 GTATGTTGAAAAATGCGGTGATGACTTGTGGGTCGGAGTGAAAGGCTAATCAAGCCGGGA 76
Query 325 AATAGCTCGT 334
|||||| ||
Sbjct 75 GATAGCTGGT 66
>seq257960
Length=1007
Score = 102 bits (112), Expect = 2e-19
Identities = 180/257 (70%), Gaps = 14/257 (5%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG--TGATT 68
||||| |||||||||| |||||| ||| | ||||||| || ||||| | |||
Sbjct 757 AGGGGAGTGAAATAGAACCTGAAACCGTATACGTACAAGCAGTGGGAGCGGTTCTTGAGA 816
Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAG---TCGTCACCAGCGAGGT 125
| ||||| |||| ||||||| |||||| | | ||| ||| | || ||||||||
Sbjct 817 CCGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACATTTTGT----AGCGAGGT 872
Query 126 TAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT 185
|||| | | || || ||||| || |||| |||| ||||| | ||| |||||
Sbjct 873 TAAGCGAAT-AG---CGG-AGCCGTAGGGAAACCGAGTGTTAACTGCGCGTTTAGTTGCA 927
Query 186 GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGT 245
| ||||| ||||||| |||||||| ||| | ||||||||||| |||||
Sbjct 928 AGGTGTAGACCCGAAACCGAGTGATCTAGCCATGGGCAGGTTGAAGGTTGAGTAACATCA 987
Query 246 GATGGAGGACCGAACCG 262
|||||||||||||||
Sbjct 988 ACTGGAGGACCGAACCG 1004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 967687916544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |