Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= AAMG01000345.1
Length=193
Score E
Sequences producing significant alignments: (Bits) Value
seq156888 325 4e-87
seq12757 170 2e-40
seq12755 134 1e-29
seq463838 132 5e-29
seq12756 125 7e-27
seq40952 104 2e-20
>seq156888
Length=1118
Score = 325 bits (360), Expect = 4e-87
Identities = 188/193 (97%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 343 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTTGTCTAAAA 284
Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTAC 120
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GACAACTCGTCATCAGCTCTCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTAC 224
Query 121 CACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 164
Query 181 TTAACCAGAAGTA 193
||||||||||||
Sbjct 163 ATAACCAGAAGTA 151
>seq12757
Length=610
Score = 170 bits (188), Expect = 2e-40
Identities = 160/204 (78%), Gaps = 16/204 (8%)
Strand=Plus/Minus
Query 3 ACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGA 62
|||||||||||||||| ||||| |||||||||||||||||| ||||| ||| || |
Sbjct 420 ACCTGAAGCTTAGAAGATTTTCCTGGAAGCATGGCATCAACTACTTCATCACCTTA---G 364
Query 63 TAACTCGTCATCAGCTCCCGGCCT-TAGA------------ATCCCGGATTTACCTAAGA 109
| ||||||||||||||| | |||| || | |||||||||| |||||||
Sbjct 363 TGACTCGTCATCAGCTCTCAGCCTGTACATTAAAGTACGATTTCCCGGATTTGCCTAAGA 304
Query 110 TTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTC 169
|| ||||||||||||||| |||| ||||||||| ||| |||||||||||||||||
Sbjct 303 AATCAACCTACCACCTTAAACGCGGACTACCAACGCCGCGCTAGCCTAGCCTTCTCCGTC 244
Query 170 CCTCCATCGCATTAACCAGAAGTA 193
|||||||||| | | | ||||||
Sbjct 243 TCTCCATCGCAGTTAGCGGAAGTA 220
>seq12755
Length=1866
Score = 134 bits (148), Expect = 1e-29
Identities = 138/177 (78%), Gaps = 5/177 (3%)
Strand=Plus/Minus
Query 10 GCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG-ATAACTC 68
||||||||||||||| ||||||||||| || ||||||| | || ||| | | ||
Sbjct 686 GCTTAGAAGCTTTTCCTGGAAGCATGGTATTTGCCACTTCAC--TGTACAAGTACAGCTT 629
Query 69 GTCATCAGCTCCCGGCCTTAGAAT--CCCGGATTTACCTAAGATTCCAGCCTACCACCTT 126
| ||||| || | ||| | || |||||||||||||||| | ||||||| ||||
Sbjct 628 GCTATCAGATCTCAGCCATGTAACAGCCCGGATTTACCTAAGCTGTAAGCCTACATCCTT 569
Query 127 AAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTA 183
|| |||||||||||||||| |||| | || |||||||||||||||||||||||||
Sbjct 568 TCACCTGGACAACCAACGCCAGGCTGACATAACCTTCTCCGTCCCTCCATCGCATTA 512
>seq463838
Length=280
Score = 132 bits (146), Expect = 5e-29
Identities = 143/187 (76%), Gaps = 7/187 (4%)
Strand=Plus/Minus
Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60
||| |||||||||||| |||||| ||||||||||||||||| ||||| | || |
Sbjct 213 TTATCTGAAGCTTAGAGACTTTTCCTGGAAGCATGGCATCAATGACTTCAGTACCTTAG- 155
Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAG---AATCCCGGATTTACCTAAGATTCCAGCC 117
|| |||| |||| || | | |||| || |||||||||||||||| |||| ||
Sbjct 154 --TACCTCGACATCGTATCTCAGTGTTAGTAGAAACCCGGATTTACCTAAGTCTCCA-CC 98
Query 118 TACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATC 177
||| ||| ||| |||||||||| ||||| || ||||||||||||||||| |||||
Sbjct 97 TACATACTTGAACCTGGACAACCATCGCCAGGCCCACCTAGCCTTCTCCGTCCTCCCATC 38
Query 178 GCATTAA 184
||| |||
Sbjct 37 GCAATAA 31
>seq12756
Length=1019
Score = 125 bits (138), Expect = 7e-27
Identities = 143/194 (74%), Gaps = 15/194 (8%)
Strand=Plus/Minus
Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61
|| |||||||||||| | ||||| ||||||| || |||||| ||||| || | | ||
Sbjct 705 TATCTGAAGCTTAGAGGTTTTTCCTGGAAGCCGGGTATCAACTACTTCATCTCCGTAGAG 646
Query 62 ATAACTCGTCATCAGCTCCCGGCCTT------------AGAATCCCGGATTTACCTAAGA 109
|||||||||||| || | || || || ||||||||| ||||||
Sbjct 645 ---ACTCGTCATCAGTTCTCAGCATTCTCACTAAAGAGAGCGACCCGGATTTGCCTAAGT 589
Query 110 TTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTC 169
| |||||| ||||||||| |||||||||| ||||| ||| ||||| |||||||||||
Sbjct 588 CACTTGCCTACTACCTTAAACATGGACAACCATCGCCATGCTAGCCTAACCTTCTCCGTC 529
Query 170 CCTCCATCGCATTA 183
| |||||||| ||
Sbjct 528 ACCCCATCGCAATA 515
>seq40952
Length=1454
Score = 104 bits (114), Expect = 2e-20
Identities = 132/179 (74%), Gaps = 7/179 (4%)
Strand=Plus/Plus
Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64
|||||||||||| ||||||| |||||| ||||||||| | ||||| ||| || | ||
Sbjct 773 CTGAAGCTTAGAGGCTTTTCCTGGAAGTATGGCATCAGCAACTTCATCACCTTAGTGA-- 830
Query 65 ACTCGTCATCAGCTCCCGGCCTTAGAATCC---CGGATTTACCTAAGATTCCAGCCTACC 121
|||||| || || | | ||| | | ||||||||||||| | |||||
Sbjct 831 -CTCGTC-TCGTGTCTCAGGTTTAATGTTCGTCCGGATTTACCTAAACAAACGCCCTACT 888
Query 122 ACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180
||| || ||||| |||||||||| ||| || |||||| ||||||||| ||||||||
Sbjct 889 CACTTTCACATGGACTACCAACGCCATGCTTGCTTAGCCTGCTCCGTCCCCCCATCGCA 947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515760928956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |