Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq492919 161 9e-38 seq478353 104 2e-20 seq199094 89.7 5e-16 seq257960 80.6 3e-13 >seq492919 Length=384 Score = 161 bits (178), Expect = 9e-38 Identities = 140/173 (81%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||||| Sbjct 131 GGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGGCGTGATAAGCTGCGAAAAGCTACGGG 190 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || ||||| || ||||||||||| ||| | |||||||||||||| ||| ||| ||| Sbjct 191 GACGAGCACACACCGATTGATCCGTAAATACCTGAATGGGGCAACCCACTATGTTGAAGA 250 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| | | || |||| | ||| ||| | ||||||||||||||||||| Sbjct 251 CATAGTACACCGATAGG---TGGGCAAACCCGCTGAACTGAAACATCTAAGTA 300 >seq478353 Length=548 Score = 104 bits (114), Expect = 2e-20 Identities = 144/196 (73%), Gaps = 23/196 (12%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||| | ||| || ||||||| ||| ||||||||| ||||||||||| Sbjct 133 GCATACGGTGGATGCTT-GGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGAAAAGC 191 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC----GA 116 | |||||| | |||| | | |||||||| |||| || |||||||| ||||| | Sbjct 192 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCACCTAA 251 Query 117 TATATTGGAGATA--TATCATAACGC--------TAGGCGTTAG--GCGAACGTGGGGAA 164 ||| || || |||| ||| || ||||| | || |||||| |||||| Sbjct 252 CATA----AGTTAGGTATCTTAA-GCTGAATACATAGGCTTAAGAAGCGAACCAGGGGAA 306 Query 165 CTGAAACATCTAAGTA 180 |||||||||||||||| Sbjct 307 CTGAAACATCTAAGTA 322 >seq199094 Length=690 Score = 89.7 bits (98), Expect = 5e-16 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||||||||||| || ||||||| |||||||||| ||| ||||| ||||| | Sbjct 411 ACGGTGGATGCCTAGGCAGTCAGAGGCGATGAAGGACGTGTTAATCTGCGTTAAGCTGTG 352 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||| | | | | | || |||| |||| ||||||||||| ||||| Sbjct 351 GGGAGTTGATAAAAAGCGTTAATCCACAGATTTCCGAATGGGGGAACCC 303 >seq257960 Length=1007 Score = 80.6 bits (88), Expect = 3e-13 Identities = 133/187 (71%), Gaps = 14/187 (7%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||||||| ||| || ||||||| ||||||||| |||| |||||||||| | Sbjct 297 ACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAGGACGTAATAACTTGCGAAAAGCGTTG 356 Query 66 GGGA-TTGGCACATACG-AATTGATCCGTAGATATCCGAATGGGGCAACCC-GATATATT 122 | || | | | ||| | | |||| | ||||||||||||||| ||||| || || Sbjct 357 GCGAGCTAGTA-ATAAGCATTTGAGCTAACGATATCCGAATGGGGAAACCCACATGCATA 415 Query 123 GGAGATATATCATAACGCTA---------GGCGTTAGGCGAACGTGGGGAACTGAAACAT 173 | || ||||| ||| | | || |||| ||| ||||||||||||||| Sbjct 416 AG-CATGTATCACAACATGAATACATAGTGTTGTGAGGCAAACCCGGGGAACTGAAACAT 474 Query 174 CTAAGTA 180 ||||||| Sbjct 475 CTAAGTA 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474372706262