Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq12756 205 1e-50 seq507996 201 2e-49 seq12755 185 1e-44 seq156888 165 1e-38 seq40952 156 6e-36 seq12758 141 1e-31 seq388443 132 7e-29 seq12757 116 5e-24 >seq12756 Length=1019 Score = 205 bits (226), Expect = 1e-50 Identities = 197/251 (78%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || ||| | | || |||| Sbjct 966 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCATCTTTCGATTTT-GCACA 908 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||| || || | ||||||||||||| || |||| | Sbjct 907 GTGCTGTGTTTTTAATAAACAGTTGCAGCCACCATTTCTCTGCGACCAACAATAGCTTAC 848 Query 122 ----CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || ||| ||||||| || |||| ||||||||||||||||||| |||||||||| Sbjct 847 GGAGCAAGTCCTTCACCATCATTGGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGCC 788 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 | |||||| ||| ||||| | | | |||||||||||||||||||| |||||||||||| Sbjct 787 TAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTAGTATTCTCTACCTAACCACCTGTGTC 728 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 727 GGTTTGGGGTA 717 >seq507996 Length=356 Score = 201 bits (222), Expect = 2e-49 Identities = 199/255 (78%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||| ||||| || ||||||||| ||| | | ||| ||| Sbjct 279 CTTAACCTTCCGGCACTGGGCAGGTGTCAGCCCATATACATCGCCTTTCAG-CTTAGCAT 221 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC- 119 ||||||||||||| |||||||| ||| ||| ||| ||||| ||| || |||| Sbjct 220 AGACCTGTGTTTTTGCTAAACAGTTGCTCGAATCTCTTCACTGCGGCCATCAAAAGCTTT 161 Query 120 --AACACGTCGTTC----ACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTT 173 ||| ||| ||| ||| | |||||||||||||||||||||||||||||||||| Sbjct 160 AGAACGCGTGTTTCTATTACCTTTAATGGCACCCCTTCTCCCGAAGTTACGGGGCCATTT 101 Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTG 233 ||| || ||||||| | | |||| || | ||||||||| ||||| ||| |||||||| Sbjct 100 TGCAGAGTTCCTTAGCGAGAGTTAGCCTGTACGCCTTAGATTTCTCATCCTAACCACCTG 41 Query 234 TGTCGGTTTACGGTA 248 ||||||||||||||| Sbjct 40 TGTCGGTTTACGGTA 26 >seq12755 Length=1866 Score = 185 bits (204), Expect = 1e-44 Identities = 194/252 (77%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||| | ||| || ||||| || |||| | || || ||| Sbjct 956 TTAACCTTCCAGCACCGGGCAGACATCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 898 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||| || | || | |||||||| ||| |||||||| Sbjct 897 GTGCTGTGTTTTTAATAAACAGTTGCAGCAGCCTGGTATCTGCGACTGCCAACAGCTCAA 838 Query 122 ----CACGTCGT-TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 | ||| | |||||| ||| || ||||||||||||||||||| ||||||||| Sbjct 837 GGAGCGTGTCCTATCACCATCAGCAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGC 778 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 | | |||||| | || ||||| | | | |||||| ||||||||||||||| ||||||||| Sbjct 777 CTAGTTCCTTCAGCAGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGATCACCTGTGT 718 Query 237 CGGTTTACGGTA 248 ||||||| |||| Sbjct 717 CGGTTTAGGGTA 706 >seq156888 Length=1118 Score = 165 bits (182), Expect = 1e-38 Identities = 188/251 (75%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 603 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 545 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT--- 118 | ||||||||||| ||||||||||| | || | ||| ||||| | ||| Sbjct 544 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCGTGGGCTTAC 485 Query 119 -CAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || | | |||||| || ||| | ||||||||||||||||||| ||||||||||| Sbjct 484 GCAGTAAATGCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCATTTTGCC 425 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 | |||||| ||| ||||| | | | |||||| |||||||||||| |||||||||||| Sbjct 424 TAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCACCTGTGTC 365 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 364 GGTTTGGGGTA 354 >seq40952 Length=1454 Score = 156 bits (172), Expect = 6e-36 Identities = 191/255 (75%), Gaps = 12/255 (5%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||| |||| |||||||| || ||| | | || |||| Sbjct 508 TTAACCTTCCGGCACCGGGCAGGTGTCACACCGTATACGTCATCTTGCGATTTT-GCACA 566 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||| | || || || ||||| | || | ||| | Sbjct 567 GTGCTGTGTTTTTAATAAACAGTCCCAGCCACCTGGTCACTGCGGCTCCCGTCCGCTTAG 626 Query 122 ----CACGTCGTTCACCAGCAG-TGGCACC---CCTTCTCCCGAAGTTACGGGGCCATTT 173 || ||| ||| || ||| | | | | ||||||||||||||||||| | |||| Sbjct 627 AGAGCAAGTC--TCATCA-CAGATAGGAGCGTACCTTCTCCCGAAGTTACGGTACGATTT 683 Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTG 233 |||| | |||||| ||| ||||| | | | ||||||||||||||||||||||||||||| Sbjct 684 TGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTAGTATTCTCTACCTGACCACCTG 743 Query 234 TGTCGGTTTACGGTA 248 ||||||||| |||| Sbjct 744 TGTCGGTTTGGGGTA 758 >seq12758 Length=1039 Score = 141 bits (156), Expect = 1e-31 Identities = 183/251 (73%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || ||| | | || |||| Sbjct 602 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCATCTTTCGATTTT-GCACA 544 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||| | || || | || |||| || ||| | Sbjct 543 GTGCTGTGTTTTTAATAAACAGTTCCAGCCACCTGGTTACTTCGACTACTCGTCGCTTAC 484 Query 122 ----CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || | || || ||| || ||||||||||||||||||| | |||||||| Sbjct 483 ACCGCAAGGGTTTAACGTTGAGTAGCGTACCTTCTCCCGAAGTTACGGTACTATTTTGCC 424 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 | |||||| ||| ||||| | | | |||||||||||||||||||| |||||||||||| Sbjct 423 TAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTAGTATTCTCTACCTAACCACCTGTGTC 364 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 363 GGTTTGGGGTA 353 >seq388443 Length=855 Score = 132 bits (146), Expect = 7e-29 Identities = 178/249 (71%), Gaps = 23/249 (9%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || ||||| | || ||| Sbjct 169 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACTTCATCTTACGATTTT-GCAG 227 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| | || ||| ||||| ||| || Sbjct 228 AGCCCTGTGTTTTTGATAAACAGTCGCCTGGACCTCTTCACTGCGGCCAGCA-------- 279 Query 121 ACACGTCGTTCACCAGCAGTGG-CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 || || |||| | ||||||||||||||||||||| | |||||||| | Sbjct 280 --------TT-----GCTGTGGGCGACCCTTCTCCCGAAGTTACGGGTCTATTTTGCCTA 326 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||||| ||| || | ||| | |||||| |||||| | || ||||||||||| Sbjct 327 ATTCCTTAGCCATGAATCTCTCGAGCACCTTAGAATTCTCATCTCAACTACCTGTGTCGG 386 Query 240 TTTACGGTA 248 ||| ||||| Sbjct 387 TTTGCGGTA 395 >seq12757 Length=610 Score = 116 bits (128), Expect = 5e-24 Identities = 133/177 (75%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 77 TAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA----CACGTCGT-TC 131 |||||||| || || || | |||||||| || ||||| | || ||| || Sbjct 609 TAAACAGTTGCAGCCACCTGGTATCTGCGACTGCCGTCAGCTTAGGGAGCAAGTCCCATC 550 Query 132 ACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCA 191 |||| ||| || ||||||||||||||||||| |||||||||| | |||||| | | Sbjct 549 ACCAACAGCAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGCCTAGTTCCTTCAGCC 490 Query 192 CAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||| | | | |||||| |||||||||||| |||||||||||||||||| |||| Sbjct 489 GAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCGACCACCTGTGTCGGTTTGGGGTA 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690864948046