Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq156888 221 1e-55 seq12755 183 3e-44 seq12756 163 3e-38 seq12758 145 7e-33 seq40952 140 3e-31 seq156889 134 1e-29 seq388443 96.9 3e-18 seq507996 73.4 4e-11 >seq156888 Length=1118 Score = 221 bits (244), Expect = 1e-55 Identities = 128/132 (97%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 27 TTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAAC 86 || || ||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TTACTGCGTAAGCCCACGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAAC 537 Query 87 ACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAA 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 ACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAA 597 Query 147 GGTTAATTGATG 158 |||||||||||| Sbjct 598 GGTTAATTGATG 609 >seq12755 Length=1866 Score = 183 bits (202), Expect = 3e-44 Identities = 122/136 (90%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 23 GGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAA 82 |||| ||||| | |||| || | |||| ||||||||||| ||||| |||||||||||| Sbjct 827 GGACACGCTCCTTGAGCTGTTGGCAGTCGCAGATACCAGGCTGCTGCAACTGTTTATTAA 886 Query 83 AAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCC 142 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 887 AAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGATGTCTGCCCGGTGCT 946 Query 143 GGAAGGTTAATTGATG 158 |||||||||||||||| Sbjct 947 GGAAGGTTAATTGATG 962 >seq12756 Length=1019 Score = 163 bits (180), Expect = 3e-38 Identities = 119/138 (86%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 79 || |||||||||||||||||| || ||||| ||| | || ||||| ||||||||| Sbjct 834 GAAGGACTTGCTCCGTAAGCTATTGTTGGTCGCAGAGAAATGGTGGCTGCAACTGTTTAT 893 Query 80 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 139 ||||||||||||||| |||||| |||||| |||||||| ||||||||||||||||||| Sbjct 894 TAAAAACACAGCACTGTGCAAAATCGAAAGATGACGTATACGGTGTGACGCCTGCCCGGT 953 Query 140 GCCGGAAGGTTAATTGAT 157 |||||||||||||||||| Sbjct 954 GCCGGAAGGTTAATTGAT 971 >seq12758 Length=1039 Score = 145 bits (160), Expect = 7e-33 Identities = 98/110 (89%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48 GTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAA 107 ||||||| |||||| |||| |||||||||||||||||||||||| |||||| |||| Sbjct 498 GTCGAAGTAACCAGGTGGCTGGAACTGTTTATTAAAAACACAGCACTGTGCAAAATCGAA 557 Query 108 AGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGAT 157 || |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 558 AGATGACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGAT 607 >seq40952 Length=1454 Score = 140 bits (154), Expect = 3e-31 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 24 GACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAA 83 ||||||||| ||||| | | | || || |||||| |||| |||||||||||||| Sbjct 636 GACTTGCTCTCTAAGCGGACGGGAGCCGCAGTGACCAGGTGGCTGGGACTGTTTATTAAA 577 Query 84 AACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCG 143 ||||||||||| |||||| || ||| |||||||| |||||||| |||||||||||||| Sbjct 576 AACACAGCACTGTGCAAAATCGCAAGATGACGTATACGGTGTGACACCTGCCCGGTGCCG 517 Query 144 GAAGGTTAATTGATG 158 ||||||||||||||| Sbjct 516 GAAGGTTAATTGATG 502 >seq156889 Length=532 Score = 134 bits (148), Expect = 1e-29 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 56 TACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACG 115 ||||||| ||||| ||||||||| |||||||||||||| |||||| || ||| |||| Sbjct 1 TACCAGGTGGCTGCAACTGTTTATCAAAAACACAGCACTGTGCAAAATCGCAAGATGACG 60 Query 116 TATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGAT 157 |||| ||||||||||||||||||||||||||||||||||||| Sbjct 61 TATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGAT 102 >seq388443 Length=855 Score = 96.9 bits (106), Expect = 3e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| ||||||||| || ||| || |||||||| ||| Sbjct 254 GCGACTGTTTATCAAAAACACAGGGCTCTGCAAAATCGTAAGATGAAGTATAGGGCCTGA 195 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAATTG 155 | |||||||||||| |||||||||| || Sbjct 194 CACCTGCCCGGTGCTGGAAGGTTAAGTG 167 >seq507996 Length=356 Score = 73.4 bits (80), Expect = 4e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 || |||||||| |||||||||| || ||| || ||||| || ||||| || ||| Sbjct 194 GCAACTGTTTAGCAAAAACACAGGTCTATGCTAAGCTGAAAGGCGATGTATATGGGCTGA 253 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | ||||||| ||||||||||||||| Sbjct 254 CACCTGCCCAGTGCCGGAAGGTTAA 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474372706262