Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1160 343 2e-92
seq394887 140 6e-31
seq196718 82.4 1e-13
seq186018 82.4 1e-13
seq306624 78.8 2e-12
seq12755 78.8 2e-12
seq30306 77.0 6e-12
>seq1160
Length=1464
Score = 343 bits (380), Expect = 2e-92
Identities = 254/295 (86%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 509 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 568
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 569 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 628
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 629 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 688
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 689 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 748
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||| | | | |||||||| ||||| | |||||| ||| ||||||||
Sbjct 749 TGAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 803
>seq394887
Length=251
Score = 140 bits (154), Expect = 6e-31
Identities = 140/183 (77%), Gaps = 19/183 (10%)
Strand=Plus/Plus
Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104
|||||||||||||||| || ||||||||||||||||| || |||||| |||| |||| |
Sbjct 1 AAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCATGTCCCCTATAAGTGTGTGATGA 60
Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164
|||| | || | | |||||||| ||| ||||| ||||||||| ||||||||||||||
Sbjct 61 ATCC-ATGC-TGCTGAATTCTGTTTCACAATGATGTGAAGAGCCGTCATCGAAGGATCAA 118
Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
|| ||||| ||||||||||||| | | |||| |||||||||||
Sbjct 119 AAGGCAAC-----------------GCTGCCACAAGCCGGCTCTCCCCGTGGTAACTTTC 161
Query 225 CTG 227
|||
Sbjct 162 CTG 164
>seq196718
Length=378
Score = 82.4 bits (90), Expect = 1e-13
Identities = 124/175 (71%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| || ||||| | ||
Sbjct 338 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 279
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||||| ||| || | | ||| || ||||||||||||| | |||| | |
Sbjct 278 CTTGGGACCGACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 222
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||| ||||| | | |||| |||||||| | ||| |||||
Sbjct 221 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 167
>seq186018
Length=271
Score = 82.4 bits (90), Expect = 1e-13
Identities = 124/175 (71%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| || ||||| | ||
Sbjct 246 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 187
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||||| ||| || | | ||| || ||||||||||||| | |||| | |
Sbjct 186 CTTGGGACCGACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 130
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||| ||||| | | |||| |||||||| | ||| |||||
Sbjct 129 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 75
>seq306624
Length=388
Score = 78.8 bits (86), Expect = 2e-12
Identities = 123/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| |||||
Sbjct 381 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACC 322
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| |||| | | | ||| || ||||||||||||| | |||| |
Sbjct 321 CTTGGGACC---TTCTCCAGCCCCAGGATGTGACGAGCCGACATCGAGGTGCCAAACCCC 265
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||| | ||||| | | |||| |||||||| | ||| |||||
Sbjct 264 CCCGTCGATATGAGCTCTTGGGGGAGATCAGCCTGTTATCCCCGGCGTACCTTTT 210
>seq12755
Length=1866
Score = 78.8 bits (86), Expect = 2e-12
Identities = 124/175 (71%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| || ||||| | ||
Sbjct 1702 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACC 1643
Query 113 CTTACCGAATTCTGCTTCGG---TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
|||| || ||||||| | || ||| || ||||||||||||| | |||| | |
Sbjct 1642 CTTAG-GAC--CTGCTTCAGCCCTAGGATGAGATGAGCCGACATCGAGGTGCCAAACACC 1586
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||| ||||| | | |||| |||||||| ||| |||||
Sbjct 1585 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCAGAGTACCTTTT 1531
>seq30306
Length=3402
Score = 77.0 bits (84), Expect = 6e-12
Identities = 93/127 (73%), Gaps = 6/127 (5%)
Strand=Plus/Minus
Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103
||||| ||||||||||| ||||| | |||||||| | ||| ||| ||||||
Sbjct 1887 AAAACGAACCTGTCTCACATCGGTCCAGCCCCAGCTCCCTTTC------AGTCGGTGAAT 1834
Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163
||| |||| || || ||||||| | ||||| || | || |||||| ||||||||
Sbjct 1833 AATTCAACACTCTGTGATTTCTGCTACACAATGATCGGGAAAGACGACATGCAAGGATCA 1774
Query 164 AAAAGCA 170
|||||||
Sbjct 1773 AAAAGCA 1767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 849910110912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |