Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq12755 199 8e-49 seq306624 183 6e-44 seq196718 127 4e-27 seq156890 114 3e-23 seq156888 104 5e-20 seq186018 98.7 2e-18 seq156889 86.0 1e-14 seq12758 80.6 5e-13 seq40952 77.0 6e-12 >seq12755 Length=1866 Score = 199 bits (220), Expect = 8e-49 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| ||| | ||| |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 1322 GGACAATGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 1381 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||| | | ||||| || ||||| | || | ||| ||||||||||| | | Sbjct 1382 TACGAAGGTGCGCTCAGACCGGTCGGAAATCGGTCGTAGAGTATAAAGGCAAAAGCGCGC 1441 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 || ||||||| |||| |||||| |||||| |||||||| || |||| |||||||| ||| Sbjct 1442 TTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAAGTAGGTCTTAGTGATCCGGTGGTT 1501 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 1502 CTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 1549 >seq306624 Length=388 Score = 183 bits (202), Expect = 6e-44 Identities = 169/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||||||||||| |||||||||| |||||||||||||||| | |||| | |||| Sbjct 15 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCTAAAGGTTCCCT 74 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 ||| | ||| |||| |||| | ||||||| |||| ||||| | ||||||| || || Sbjct 75 CAGTACGCTTGGTAACCGTGCGTAGAGTGCAATGGCATAAGGGAGCTTGACTGAGAGACA 134 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 || ||| | |||| |||||||| | || || |||||||| ||| | | |||||| ||| Sbjct 135 TACAGGTCGATCAGGTACGAAAGTAGAGCATAGTGATCCGGTGGTTCCGCATGGAAGGGC 194 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| | ||||||||| ||| | ||||||| Sbjct 195 CATCGCTCAAAGGATAAAAGGTACGCCGGGGATA 228 >seq196718 Length=378 Score = 127 bits (140), Expect = 4e-27 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155 AAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTG 214 ||||||||||||||| || | ||| | || || || ||| | | | || |||| Sbjct 1 AAAGAGTAACGGAGGAGCACGAAGGTTGGCTAAGTACGGTCGGACATCGTACGGTTAGTG 60 Query 215 CAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGC 274 ||| |||| ||| | || ||||||| || || ||| |||||| |||||||| || | Sbjct 61 CAATGGCATAAGCCAGCTTAACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTC 120 Query 275 TTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGG 334 || |||||||| ||| |||||||||| |||| |||||| ||||||||||| ||| | || Sbjct 121 ATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGG 180 Query 335 GGATA 339 ||||| Sbjct 181 GGATA 185 >seq156890 Length=341 Score = 114 bits (126), Expect = 3e-23 Identities = 136/183 (74%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||| | | ||| |||||||||||||||||| ||||||||||||||||||||| | Sbjct 160 GGACAGTGCCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAG 219 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | | ||| | || | | || ||| | | || | ||||||| |||| || | | Sbjct 220 CACGAAGGTTGGCTAAACACGGTCGGACATCGTGAGGTTAGTGCAATGGCATAA-GCCGC 278 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 || ||||||| | |||||| |||||| ||||||| || | || |||||||| ||| Sbjct 279 TTAACTGCGAGAATGACAAGTCGAGCAGGTACGAAAGCAGGTCATAGTGATCCGGTGGTT 338 Query 292 CTG 294 ||| Sbjct 339 CTG 341 >seq156888 Length=1118 Score = 104 bits (114), Expect = 5e-20 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 972 GGACAGTGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 1031 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||| | | ||||| || ||||| | || | ||| ||||||||||| | | Sbjct 1032 TACGAAGGTGCGCTCAGACCGGTCGGAAATCGGTCGTAGAGTATAAAGGCAAAAGCGCGC 1091 Query 232 TTGACTGCGACACCCTCAAGTCTAGCA 258 |||||||||| || || ||| |||| Sbjct 1092 TTGACTGCGAGACAGACACGTCGAGCA 1118 >seq186018 Length=271 Score = 98.7 bits (108), Expect = 2e-18 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307 || ||| |||||| |||||||| || | || |||||||| ||| |||||||||| |||| Sbjct 2 CACGTCGAGCAGGTACGAAAGTAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCA 61 Query 308 TCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 62 TCGCTCAACGGATAAAAGGTACTCCGGGGATA 93 >seq156889 Length=532 Score = 86.0 bits (94), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 59 ATACTACCCCTGTTGTATTGGATTTCTAAC-CGGACGACGTATAACCGTTGACGGGACAG 117 |||| |||| ||| || ||| ||||||| | | | | ||| ||||| |||||| Sbjct 414 ATACCACCCTTGTAGTTTTGATGTTCTAACTCTGGCCCCTTATCGGGGTTGA--GGACAG 471 Query 118 TGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAA 177 || | | ||| |||||||||||||||||| ||||||||||||||||||||| || | || Sbjct 472 TGCCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGCACGAA 531 Query 178 G 178 | Sbjct 532 G 532 >seq12758 Length=1039 Score = 80.6 bits (88), Expect = 5e-13 Identities = 103/137 (75%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 44 GGAGCCGCTGTTGGGATACTACCCCTGT-TGTATTGGAT-TTCTAACCGGACGACGTATA 101 |||||| || ||| |||| |||| ||| || | ||| |||||||| | |||| | Sbjct 906 GGAGCCACTCTTGAAATACCACCCTTGTATGCGT--GATGTTCTAACCTAGGGCCGTA-A 962 Query 102 ACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGT 161 ||| |||||| |||| | ||| |||||||||||||||||| ||||| ||||||| Sbjct 963 TCCGGCCTGGGGACACTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGT 1022 Query 162 AACGGAGGCGCCCAAAG 178 |||||||| || | ||| Sbjct 1023 AACGGAGGAGCACGAAG 1039 >seq40952 Length=1454 Score = 77.0 bits (84), Expect = 6e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||| | | ||| |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 136 GGACAGTGCCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 77 Query 172 CCCAAAG 178 | | ||| Sbjct 76 CACGAAG 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977237468352