Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq156889 147 2e-33 seq40952 147 2e-33 seq12758 147 2e-33 seq388443 138 1e-30 seq156888 138 1e-30 seq156799 138 1e-30 seq12755 127 2e-27 seq506033 93.3 5e-17 seq457568 93.3 5e-17 >seq156889 Length=532 Score = 147 bits (162), Expect = 2e-33 Identities = 123/152 (81%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| |||||||||||||| | | ||| ||||||| Sbjct 310 CGGGGTCTTTCCGTCTAGCCGCGGGTATACGGCATCTTCACCGCAATTTCAACTTCACTG 251 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 250 AG-TCTCGGCTGGAGACAGCGTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACC 192 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 191 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 160 >seq40952 Length=1454 Score = 147 bits (162), Expect = 2e-33 Identities = 123/152 (81%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | ||||||||||| Sbjct 293 CGGGGTCTTTCCGTCTAGCCGCGGGTACACAGCATCTTCACTGCGATTTCAATTTCACTG 352 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||||||||||||||||||||||||||||| Sbjct 353 AG-TCTCGGGTGGAGACAGCGTGGCCATGGTTACACCATTCGTGCAGGTCGGAACTTACC 411 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 412 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 443 >seq12758 Length=1039 Score = 147 bits (162), Expect = 2e-33 Identities = 123/152 (81%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| ||||||||| |||| | | ||||||||||| Sbjct 817 CGGGGTCTTTCCGTCTAGCCGCGGGTATACGGCATCTTAACCGCAAATTCAATTTCACTG 758 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 757 AG-TCTCGGGTGGAGACAGTGTGGCCATGATTACGCCATTCGTGCAGGTCGGAACTTACC 699 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 698 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 667 >seq388443 Length=855 Score = 138 bits (152), Expect = 1e-30 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 67 TACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGC 126 |||||||||||||| ||||||| || |||||||| |||||||||||||| Sbjct 1 TACTACAATTTCACCGAGCTCATGGCTGAGACAGTGTCCAGATCGTTACACCATTCGTGC 60 Query 127 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNN 186 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGC 120 Query 187 NGTTTACTGGGGCTTC 202 ||||||||||||||| Sbjct 121 CGTTTACTGGGGCTTC 136 >seq156888 Length=1118 Score = 138 bits (152), Expect = 1e-30 Identities = 121/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| ||||| || | |||||||||| | | | ||||||||||| Sbjct 816 CGGGGTCTTTCCGTCTAGCCGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTG 757 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 756 AG-TCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACC 698 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 697 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 666 >seq156799 Length=475 Score = 138 bits (152), Expect = 1e-30 Identities = 121/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | ||||||| || | | | ||||||||||| Sbjct 185 CGGGGTCTTTCCGTCTAGCCGCGGGTACACTGCATCTTAACAGCGATTTCAATTTCACTG 126 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 125 AG-TCTCGGGTGGAGACAGCGTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACC 67 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 66 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 35 >seq12755 Length=1866 Score = 127 bits (140), Expect = 2e-27 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | | ||||||||| Sbjct 1169 CGGGGTCTTTCCGTCTAGCCGCGGGTACACAGCATCTTCACTGCGATTTCGATTTCACTG 1110 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || | | || |||||| || |||||||||||||||||||||||| Sbjct 1109 AG-TCTCTGCTGGAGACAGCGCTGCCATCATTATGTCATTCGTGCAGGTCGGAACTTACC 1051 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTT 201 |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1050 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 991 Query 202 C 202 | Sbjct 990 C 990 >seq506033 Length=237 Score = 93.3 bits (102), Expect = 5e-17 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||| Sbjct 66 GGGTCTTTTCGTCCCACTGCGGGTAAGCGGCATCTTCACCGCTACTACAATTTCACCGAG 7 Query 85 CTCA 88 |||| Sbjct 6 CTCA 3 >seq457568 Length=238 Score = 93.3 bits (102), Expect = 5e-17 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||| Sbjct 66 GGGTCTTTTCGTCCCACTGCGGGTAAACGGCATCTTCACCGTTACTACAATTTCACCGAG 7 Query 85 CTCA 88 |||| Sbjct 6 CTCA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544414313898