Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq392608 331 3e-88 seq257960 232 2e-58 seq337199 221 4e-55 seq362979 208 3e-51 seq337200 165 3e-38 seq351919 158 4e-36 seq266509 156 2e-35 seq266510 150 6e-34 seq35889 138 4e-30 >seq392608 Length=818 Score = 331 bits (366), Expect = 3e-88 Identities = 358/469 (76%), Gaps = 19/469 (4%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 |||||||||||||||||||||||||||| || |||||| | ||||||||||||||||| Sbjct 486 ACGCTGCACCTAAATGCATTTCGGGGAGTACGAGCTATTTCCGAGTTTGATTGGCCTTTC 427 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 ||||||| |||||| ||||||| | |||||||| | | ||||||||||||||| Sbjct 426 ACCCCTACCCACAGATCATCCCAAGACTTTTCAACGTCA-ACGGTTCGGTCCTCCACTTT 368 Query 255 GTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTG 314 || ||||| ||||||||||| |||||| |||||||| | |||| |||| | Sbjct 367 GTGTTACCAAAGCTTCAACCTGTCCATGGGTAGATCACACGGTTTCGCGTCTAACACTAC 308 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC---CCCACACGGGTTAAC 371 ||| | |||||||||| |||||||||||||||||| | | | || ||| | Sbjct 307 TGACTAAAGCGCCCTATTCAGACTCGCTTTCGCTACGGATCCGTGGCTTAACCACTTATC 248 Query 372 CTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTAC 431 || || | ||||| |||||| ||||||||| | ||||||||||||||||||| Sbjct 247 CTTGCCA-GCAACGTTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACC---CCA 192 Query 432 CTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTC 491 ||||| | |||||||| | ||||| || ||||||||||| ||||||||||| Sbjct 191 CTAAAGG--------GCTCCGACCGCTTGTAAGCGTATGGTTTCAGGATCTATTTCACTC 140 Query 492 C--CCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 | || ||| ||||||||||||||||||||||||| || | ||||||||| | | Sbjct 139 CGTTATTCA-CGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCA 81 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 ||||||||||| |||| ||| ||||||||||| ||||| || ||||| Sbjct 80 GGAGTATTTAGCCTTAGCGGATGGTCCCGCCAAATTCAGACAGGATTTC 32 >seq257960 Length=1007 Score = 232 bits (256), Expect = 2e-58 Identities = 270/359 (75%), Gaps = 13/359 (4%) Strand=Plus/Minus Query 233 AGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292 ||| |||||||||||||| | | |||| | ||||||||||||||||| |||||||| Sbjct 1007 AGTCGGTTCGGTCCTCCAGTTGATGTTACTCAACCTTCAACCTGCCCATGGCTAGATCAC 948 Query 293 TTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGG 352 | | ||||||||| | | ||| ||| | |||| | || ||||| |||| |||||| Sbjct 947 TCGGTTTCGGGTCTACACCTTGCAACTAA-ACGCGCAGTTAACACTCGGTTTCCCTACGG 889 Query 353 CTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAG 412 || | | | || |||||||||| ||| || | || |||| | | |||| | |||||| Sbjct 888 CTCCGCTATTCGC-TTAACCTCGCTACAAAATGTAAG-TCGCTGACCCATTATACAAAAG 831 Query 413 GCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGT 472 | |||| ||||| ||| | | || | ||||| || | ||||| | | | ||| Sbjct 830 GTACGCAGTCAC--GGTCTCAAGAA-------CCGCTCCCACTGCTTGTACGTATACGGT 780 Query 473 TTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 ||||||| |||||||||||||| | ||||||| |||||| |||||||||||||||||| | Sbjct 779 TTCAGGTTCTATTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGG 720 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 | | |||||||||| |||||||||||| ||| || ||||||| ||| ||||| || Sbjct 719 TTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAAAC 661 >seq337199 Length=308 Score = 221 bits (244), Expect = 4e-55 Identities = 218/279 (78%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 105 CAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAA 164 |||||||||||| ||| | | | ||| ||| |||||||| ||||||||||||| Sbjct 10 CAGTGCTCTACCCCCGTAAGTATTCGTCCGAGGCTCTACCTAAATAGATTTCGGGGAGAA 69 Query 165 CCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTT 224 ||||||||| | |||||||| ||||||||| |||| ||||| |||||||||| | ||| Sbjct 70 CCAGCTATCTCCCGGTTTGATTAGCCTTTCACTCCTAACCACAAGTCATCCCCTAACTTT 129 Query 225 TCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGA 284 ||||| | |||||||||||||||||| | | |||| | ||||||||||| ||||| Sbjct 130 TCAACGTTAGTGGGTTCGGTCCTCCAGTTGATGTTACTCAACCTTCAACCTGCTCATGGC 189 Query 285 TAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTT 344 |||||||| | ||||||||| | | ||| ||| || ||||| || |||||| ||| Sbjct 190 TAGATCACCGGGTTTCGGGTCTATACCTTGCAACT-ATTCGCCCAGTTAAGACTCGGTTT 248 Query 345 CGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAA 383 | |||||||||||| | | |||||||||||| ||| || Sbjct 249 CCCTACGGCTACCCTA-ATCGGTTAACCTCGCTACAAAA 286 >seq362979 Length=304 Score = 208 bits (230), Expect = 3e-51 Identities = 193/242 (80%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 |||||||| ||||||||||||||||||||| | | |||||| ||||||||| || | Sbjct 44 ACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCCCGGCTTGATTAGCCTTTCACTCCGA 103 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 ||||| |||||| || || |||||||| || ||| ||||||||||||| | | |||| Sbjct 104 CCCACAAGTCATCACCGCATTTTTCAACATACGTGTGTTCGGTCCTCCAGTTGATGTTAC 163 Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCA 321 | |||||||||||||||||||||||| | | ||||||||| | | ||| ||| | Sbjct 164 TCAACCTTCAACCTGCCCATGGATAGATCGCCCGGTTTCGGGTCTATACCCTGCAACT-A 222 Query 322 TACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACAC 381 |||||||||| |||||||||||||||||||| ||| | || ||||||||| || ||| Sbjct 223 AACGCCCTATTAAGACTCGCTTTCGCTACGGCTCCCCTAAAC-GGTTAACCTTGCTACAG 281 Query 382 AA 383 || Sbjct 282 AA 283 >seq337200 Length=248 Score = 165 bits (182), Expect = 3e-38 Identities = 184/242 (76%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 105 CAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGA 163 |||||||||||| || | || || | | |||| |||||||| ||||| ||||| Sbjct 8 CAGTGCTCTACCCCCAATAGTGATACCTGAGGCGCT--ACCTAAATAGCTTTCGAGGAGA 65 Query 164 ACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTT 223 |||||||||| | ||||||||||||||||||||| | ||||| ||||||| || | || Sbjct 66 ACCAGCTATCTCCGGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTT 125 Query 224 TTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGG 283 |||||| | ||| |||||||||||||| | | |||| | ||||||||||||||||| Sbjct 126 TTCAACATTAGTCGGTTCGGTCCTCCAGTTGATGTTACTCAACCTTCAACCTGCCCATGG 185 Query 284 ATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTT 343 |||||||| | ||||||||| | || ||| || ||||| || |||||| || Sbjct 186 CTAGATCACCAGGTTTCGGGTCTAATCCCAGCAACT-ATTCGCCCAGTTAAGACTCGGTT 244 Query 344 TC 345 || Sbjct 245 TC 246 >seq351919 Length=286 Score = 158 bits (174), Expect = 4e-36 Identities = 217/297 (73%), Gaps = 15/297 (5%) Strand=Plus/Minus Query 269 TCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCC 328 ||||||||||||||| |||||||| | ||||||||| | || ||| || ||| | Sbjct 286 TCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTAATCCCAGCAACT-ATTCGCGC 228 Query 329 TATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAA 388 || ||||| |||| |||||||| | | | || ||||||| || || || || Sbjct 227 AGTTAACACTCGGTTTCCCTACGGCTCCGCTATTCGC-TTAACCTTGCTACTGAAATTAA 169 Query 389 ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGC 448 ||| | | |||| | ||||||| |||| ||||| | || ||| || || Sbjct 168 G-TCGTTGACCCATTATACAAAAGGTACGCAGTCACA--GAAC----AAG-----TCTGC 121 Query 449 TCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTT 507 ||| || | ||||| | | | |||||||||| |||||||||||||| | ||||||| ||| Sbjct 120 TCCCACTGCTTGTACGTATACGGTTTCAGGTTCTATTTCACTCCCCTCACAGGGGTTCTT 61 Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 ||| |||||||||||||||||| || | |||||||||| || ||||||||| ||| Sbjct 60 TTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 4 >seq266509 Length=210 Score = 156 bits (172), Expect = 2e-35 Identities = 164/213 (77%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 388 AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAG 447 || |||| | | |||| | ||||||| |||| |||||| |||| | | || || Sbjct 2 AAGTCGCTGACCCATTATACAAAAGGTACGCGGTCACC------CTAATA---AATTAAG 52 Query 448 -CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTAC 505 |||| || | ||||| ||||| |||||||||| |||||||||||||| | ||||||| | Sbjct 53 GCTCCCACTGCTTGTACGCACACGGTTTCAGGTTCTATTTCACTCCCCTCACAGGGGTTC 112 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||| |||||||||||||||||| || | |||||||||| |||||||||||| ||| Sbjct 113 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTG 172 Query 566 ACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 || ||||||| ||| |||| || ||||| Sbjct 173 GAGGATGGTCCCCCCATCTTCAAACAGGATTTC 205 >seq266510 Length=454 Score = 150 bits (166), Expect = 6e-34 Identities = 162/213 (76%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 388 AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAG 447 || |||| | | |||| | ||||||| |||| |||||| | ||||| || | Sbjct 2 AAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCA---AACTAAA------TTTGG 52 Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACT 506 |||| || | ||||| | | |||||||||| |||||||||||||| | ||||||| || Sbjct 53 CTCCCACTGCTTGTACGTATGCGGTTTCAGGTTCTATTTCACTCCCCTCACAGGGGTTCT 112 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAA 566 |||| |||||||||||||||||| || | |||||||||| || ||||||||| ||| Sbjct 113 TTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTTAGTAGTATTTAGCCTTGG 172 Query 567 CGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || ||||||| ||| ||||| || || ||||| Sbjct 173 AGGATGGTCCCCCCATATTCAGACAAAGTTTCA 205 >seq35889 Length=586 Score = 138 bits (152), Expect = 4e-30 Identities = 159/213 (75%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 388 AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAG 447 || |||| | | |||| | ||||||| |||| |||||| | | ||| | | Sbjct 2 AAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC------CAACAAG-----TGGG 50 Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACT 506 |||| || | ||||| | ||| |||||||||| |||||||||||||| | ||||||| || Sbjct 51 CTCCTACTGCTTGTACGTACACGGTTTCAGGTTCTATTTCACTCCCCTCACAGGGGTTCT 110 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAA 566 |||| |||||||||||||||||| || | |||||||||| ||||||||||| |||| Sbjct 111 TTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTTGGGAGTATTTAGCCTTAG 170 Query 567 CGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||| | | ||||| | || ||||| Sbjct 171 ATGATGGTCCACCTATATTCAGTCAAAGTTTCA 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1808048475648