Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq142421 208 2e-51
seq312118 206 5e-51
seq190646 190 4e-46
seq127494 185 2e-44
seq458515 181 2e-43
seq443255 178 3e-42
seq142356 96.9 7e-18
seq268572 86.0 1e-14
seq190644 73.4 8e-11
>seq142421
Length=429
Score = 208 bits (230), Expect = 2e-51
Identities = 142/160 (89%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 161 GGCATGGCTGCATCAGGCTTTCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 102
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| |||
Sbjct 101 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAGGGAT 42
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
||||| ||||||| || |||| ||||||||||| ||||||
Sbjct 41 CGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 2
>seq312118
Length=428
Score = 206 bits (228), Expect = 5e-51
Identities = 233/306 (76%), Gaps = 7/306 (2%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||||| |||| |||||||| |||||| |||||||||||||||||||||
Sbjct 391 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 332
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| |||
Sbjct 331 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGAT 272
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
||||| ||||||| || |||| ||||||||||| |||||| | || ||||| |
Sbjct 271 CGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCCACCTAGGCTCATCTGATA 212
Query 181 GCG-ATAAATCTTTGGTCAAAGAATGATGCCATCC-TCTGACATTATGCGGTATTAGCGT 238
||| | | |||| || | | || | ||| ||||||||||||||||
Sbjct 211 GCGCAAGGCCCGAAGGTC---CCCTGCTTTCTCCCGTAGGAC-GTATGCGGTATTAGCGT 156
Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298
||||||| |||||||| || | || |||||| || || | || ||||||||||||||
Sbjct 155 CCGTTTCCGAACGTTATCCCCCACTATCAGGCAGATTCCT-AGGTATTACTCACCCGTCC 97
Query 299 GCCACT 304
||| ||
Sbjct 96 GCCGCT 91
>seq190646
Length=382
Score = 190 bits (210), Expect = 4e-46
Identities = 218/289 (75%), Gaps = 17/289 (6%)
Strand=Plus/Minus
Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 382 CCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 323
Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143
|| |||||| | ||| |||||||| || |||| |||||||| ||||||| ||| ||| |
Sbjct 322 CAGTGTGGCTGATCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCTCTTACC 263
Query 144 TCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAA 203
|||||||| | |||||| | | || ||||| ||| | | |||| |||||
Sbjct 262 TCACCAACAAGCTAATCCCACTTGGGCTCATCTAGTCGCG--AGAGCTTT----CAAGAA 209
Query 204 TGATGCCATCCTCTGAC--------ATTATGCGGTATTAGCGTTCGTTTCCAAACGTTAT 255
|| ||| ||| | || |||||||||||||| |||||||||| ||| |
Sbjct 208 -GAGGCC-CCCTTTCACCCGTAGGTCGTATGCGGTATTAGCAGTCGTTTCCAACTGTTGT 151
Query 256 TCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304
|| ||| |||||| || | || | ||||||||||||||||| ||
Sbjct 150 CCCCCTCGACTAGGCAGATT-CCCAAGCATTACTCACCCGTCCGCCGCT 103
>seq127494
Length=1980
Score = 185 bits (204), Expect = 2e-44
Identities = 137/160 (86%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 300 GGCATGGCTGGATCAGGGTTTCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 241
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||| |||||||||||||||||| |||||| | ||| |||||||| || ||||| |||
Sbjct 240 GAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCATCCTCTCAGACCAGCTACAGAT 181
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
||||| | |||| ||| ||| | ||||| ||| ||||||
Sbjct 180 CGTCGCCATGGTAGGCCTTTACCCCACCATCTAGCTAATC 141
>seq458515
Length=281
Score = 181 bits (200), Expect = 2e-43
Identities = 156/193 (81%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||||| || | |||||||| |||||| || ||||||||||||||||||
Sbjct 45 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAG 104
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| ||||| | || |||||||| | ||||| ||
Sbjct 105 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACCCAT 164
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
||| | |||||| || ||| || |||||||| ||||| || ||| || |||||||||
Sbjct 165 CGTAGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCATCTTTCA 224
Query 181 GCGATAAATCTTT 193
||||||||||||
Sbjct 225 CCGATAAATCTTT 237
>seq443255
Length=443
Score = 178 bits (196), Expect = 3e-42
Identities = 222/302 (74%), Gaps = 2/302 (1%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||| || | |||||| |||||| || ||||||||||||||||||
Sbjct 347 GGCATGGCTGGTTCAGACTTGCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 288
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| ||||| | || |||||||| | ||||| ||
Sbjct 287 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACCCAT 228
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
||| | |||||| || ||| || |||||||| ||||| || ||| || ||||||| |
Sbjct 227 CGTAGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCATCTTTTA 168
Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCC-ATCCTCTGACATTATGCGGTATTAGCGTT 239
|||||||||||| | ||| ||||||| || || | | | ||| |||||||
Sbjct 167 CCGATAAATCTTTAATTAAATCTTGATGCCAATACT-TAATACTATAAGGTATTAATCCA 109
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||| | ||| || | ||||||| || |||| ||| ||||| ||||||| ||
Sbjct 108 AATTTCTCTGGGCTATCCCTTTGTGAAAGGTAGATTGCATACGCGTTACGCACCCGTGCG 49
Query 300 CC 301
||
Sbjct 48 CC 47
>seq142356
Length=252
Score = 96.9 bits (106), Expect = 7e-18
Identities = 62/68 (91%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||||||||||| || | ||||||||||||||| |||||||||||||||||||||
Sbjct 68 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 9
Query 61 GAGTCTGG 68
||||||||
Sbjct 8 GAGTCTGG 1
>seq268572
Length=1256
Score = 86.0 bits (94), Expect = 1e-14
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||||| |||| |||||||| |||||| |||||||||||||||||||||
Sbjct 65 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 6
Query 61 GAGTC 65
|||||
Sbjct 5 GAGTC 1
>seq190644
Length=416
Score = 73.4 bits (80), Expect = 8e-11
Identities = 69/87 (79%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 218 GACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGC 277
||||||||||||||||||| |||||||||| ||| | || | | |||||| ||| |
Sbjct 333 GACATTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCACCTCAAGGCATGTT-C 275
Query 278 TCACGTGTTACTCACCCGTCCGCCACT 304
|| | ||||||||||||||||| ||
Sbjct 274 CCAAGCATTACTCACCCGTCCGCCGCT 248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 993153388032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |