Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq40952 219 1e-54 seq12755 203 8e-50 seq12756 187 6e-45 seq245534 138 3e-30 seq392608 114 3e-23 >seq40952 Length=1454 Score = 219 bits (242), Expect = 1e-54 Identities = 300/409 (73%), Gaps = 19/409 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||||| |||| | || ||| || Sbjct 985 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTTACCCTACCCTGATTAACATGGGA 1044 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGA----TTCCCACCCGTCACACGCTACTCATG 116 ||||||||||| ||||| |||| ||| | ||| | | || |||||||| Sbjct 1045 TAGGAACCCTTGGTCTTCCGGCGT--GGGAGTTTTTCACTCCCATTAT-CGTTACTCATG 1101 Query 117 CCTGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGG--CAGCTTCACCA-CT 172 | |||||| |||| | || | ||||| || || | ||||| || ||||| | || Sbjct 1102 TCAGCATTCGCACTTCTGAT-ACCTCCAGCAAAC---CTCCCGGGTCACCTTCAACGGCT 1157 Query 173 GACACGACGCTCCCCTACC---CAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTA 229 ||| ||||||||||||| || || | | | || ||||||||| | ||| ||| Sbjct 1158 TACAGAACGCTCCCCTACCACTCATCCTAAGATGAATCCGCAGCTTCGGTGCATAGTTTA 1217 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 |||||| ||||| || |||| || ||| ||||||||||||||||||| ||||| | Sbjct 1218 -GCCCCGTTACATCTTCCGCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAA 1276 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 |||||||||||||| ||||||||||||||| ||||| || |||||||| |||||||| Sbjct 1277 AGGATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGGGCCTTTCCACATCGTTTCCCAC 1336 Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | | |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 1337 TTAACTATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 1385 >seq12755 Length=1866 Score = 203 bits (224), Expect = 8e-50 Identities = 294/407 (72%), Gaps = 10/407 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||||| | || ||| | Sbjct 477 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCAGCCCCGATTAACGTTGGA 418 Query 61 CTGGAACCCTTGGATAATC-GGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 |||||||||||| || || |||| || | || ||| || | || |||||| | | Sbjct 417 CTGGAACCCTTG-ATCTTCCGGCGTGCGAGCTTTTCACTCGCATTATCGTTACTCACGTC 359 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| | || | | ||||| || | | || || |||||| || |||| Sbjct 358 AGCATTCGCTCTTGTGATACCTCCAGCATGCCTT-ACGACACACCTTCACAGGCTTACAC 300 Query 178 GACGCTCCCCTACC-CAACCACACAGGTTG----CCACAGCTTCGGCGGATAACTTAAGC 232 ||||||||||||| | | ||| || || |||||||||| || || ||| Sbjct 299 AACGCTCCCCTACCACTTGAAAACAAATTCAAATCCGCAGCTTCGGCTCCTAGTTTGAGC 240 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| ||||| || |||||| ||| ||| ||||||||||||||| ||||| |||| Sbjct 239 CCCGTTACATCTTCCGCGCGGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGG 180 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 ||||||||||| ||||||||||||| | |||||| || |||| || ||||||||| | Sbjct 179 ATGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTATGCCTTCCCACCTCGTTTCCCACTTA 120 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 | | || ||||||||||||| | |||||| |||||||||||| Sbjct 119 ACTAGGAATTTGGGGCCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTC 73 >seq12756 Length=1019 Score = 187 bits (206), Expect = 6e-45 Identities = 296/412 (72%), Gaps = 18/412 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||||||||||||| |||||||||| | | || ||| | Sbjct 480 CGACTACGCCTTTCGGCCTCGCCTTAGGAGTCGACTCACCCTGCCCCGATTAACGTTGGA 421 Query 61 CTGGAACCCTTGGATAATCGGCG--GACGGGATTCCCACCCGTCACACGCTACTCATGCC 118 | ||||||||||| |||||| || | ||| | ||| | | || |||||||| | Sbjct 420 CAGGAACCCTTGGTCTTTCGGCGTGGAGGTTTTTCACCCCCATTAT-CGTTACTCATGTC 362 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 ||||| |||| | || | ||||| || | || | || ||||| | || ||| Sbjct 361 AACATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCAACGGCTTACA 304 Query 177 CGACGCTCCCCTACC---CAACCACACAGGT---TGCCAC---AGCTTCGGCGGATAACT 227 ||||||| ||||| ||| | ||| || ||| | |||||||| || || | Sbjct 303 GAACGCTCCTCTACCATGCAAAGA-ACAAGTCTTTGCATCCGTAGCTTCGGTGG-TATGT 246 Query 228 TAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTT 287 | ||||||| || || || |||| | ||| ||| ||||||||||||||| ||||| Sbjct 245 TTAGCCCCGTTAAATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTT 186 Query 288 CAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCC 347 || |||||||||||| |||||||| |||||| ||||| || |||||||| |||||| Sbjct 185 AAAAGATGGCTGCTTCTAAGCCAACTTCCTGGCTGTCTGAGCCTTTCCACATCGTTTCCC 126 Query 348 ACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 ||| | ||||| ||| |||||||||| | |||||| ||||||||| || Sbjct 125 ACTTAACATACACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCTTTC 74 >seq245534 Length=245 Score = 138 bits (152), Expect = 3e-30 Identities = 132/168 (79%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 ||||||| || || || |||| | ||| ||| ||||||||||||||| ||||| | Sbjct 1 AGCCCCGTTAAATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAA 60 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 | |||||||||||| |||||||| |||| | |||||| || ||||||| |||||||| Sbjct 61 ATGATGGCTGCTTCTAAGCCAACATCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCAC 120 Query 350 TGAGTCA-CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | | || ||||| ||| |||||||||| | |||||| ||||||||| Sbjct 121 TTAACCATACACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 168 >seq392608 Length=818 Score = 114 bits (126), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCT 317 || ||| |||||||| ||||||||||||| || || ||||||||||||||||||| |||| Sbjct 763 CTCGACTAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCT 704 Query 318 GGTTGTCTACGCA---ACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGC 374 | |||||| ||| | || | | |||| | ||| ||| | || ||| ||||||| Sbjct 703 AGCTGTCTATGCAGACAAACCTCGTTCTTT-CAACTTAGTATATATTTGGGGACCTTAGC 645 Query 375 TGATGATCTGGGCTGTTTCCCTCTCG 400 ||||| |||||| | ||||||||||| Sbjct 644 TGATGGTCTGGGTTCTTTCCCTCTCG 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1171411688448