Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq40952 219 1e-54
seq12755 203 8e-50
seq12756 187 6e-45
seq245534 138 3e-30
seq392608 114 3e-23
>seq40952
Length=1454
Score = 219 bits (242), Expect = 1e-54
Identities = 300/409 (73%), Gaps = 19/409 (5%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||||| ||||| |||| | || ||| ||
Sbjct 985 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTTACCCTACCCTGATTAACATGGGA 1044
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGA----TTCCCACCCGTCACACGCTACTCATG 116
||||||||||| ||||| |||| ||| | ||| | | || ||||||||
Sbjct 1045 TAGGAACCCTTGGTCTTCCGGCGT--GGGAGTTTTTCACTCCCATTAT-CGTTACTCATG 1101
Query 117 CCTGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGG--CAGCTTCACCA-CT 172
| |||||| |||| | || | ||||| || || | ||||| || ||||| | ||
Sbjct 1102 TCAGCATTCGCACTTCTGAT-ACCTCCAGCAAAC---CTCCCGGGTCACCTTCAACGGCT 1157
Query 173 GACACGACGCTCCCCTACC---CAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTA 229
||| ||||||||||||| || || | | | || ||||||||| | ||| |||
Sbjct 1158 TACAGAACGCTCCCCTACCACTCATCCTAAGATGAATCCGCAGCTTCGGTGCATAGTTTA 1217
Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289
|||||| ||||| || |||| || ||| ||||||||||||||||||| ||||| |
Sbjct 1218 -GCCCCGTTACATCTTCCGCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAA 1276
Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349
|||||||||||||| ||||||||||||||| ||||| || |||||||| ||||||||
Sbjct 1277 AGGATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGGGCCTTTCCACATCGTTTCCCAC 1336
Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
| | | |||| ||| ||||||||| | |||||| |||||||||||
Sbjct 1337 TTAACTATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 1385
>seq12755
Length=1866
Score = 203 bits (224), Expect = 8e-50
Identities = 294/407 (72%), Gaps = 10/407 (2%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||||| |||||||||||| | || ||| |
Sbjct 477 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCAGCCCCGATTAACGTTGGA 418
Query 61 CTGGAACCCTTGGATAATC-GGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118
|||||||||||| || || |||| || | || ||| || | || |||||| | |
Sbjct 417 CTGGAACCCTTG-ATCTTCCGGCGTGCGAGCTTTTCACTCGCATTATCGTTACTCACGTC 359
Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177
|||||| | || | | ||||| || | | || || |||||| || ||||
Sbjct 358 AGCATTCGCTCTTGTGATACCTCCAGCATGCCTT-ACGACACACCTTCACAGGCTTACAC 300
Query 178 GACGCTCCCCTACC-CAACCACACAGGTTG----CCACAGCTTCGGCGGATAACTTAAGC 232
||||||||||||| | | ||| || || |||||||||| || || |||
Sbjct 299 AACGCTCCCCTACCACTTGAAAACAAATTCAAATCCGCAGCTTCGGCTCCTAGTTTGAGC 240
Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292
|||| ||||| || |||||| ||| ||| ||||||||||||||| ||||| ||||
Sbjct 239 CCCGTTACATCTTCCGCGCGGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGG 180
Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352
||||||||||| ||||||||||||| | |||||| || |||| || ||||||||| |
Sbjct 179 ATGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTATGCCTTCCCACCTCGTTTCCCACTTA 120
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399
| | || ||||||||||||| | |||||| ||||||||||||
Sbjct 119 ACTAGGAATTTGGGGCCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTC 73
>seq12756
Length=1019
Score = 187 bits (206), Expect = 6e-45
Identities = 296/412 (72%), Gaps = 18/412 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||||||||||||| |||||||||| | | || ||| |
Sbjct 480 CGACTACGCCTTTCGGCCTCGCCTTAGGAGTCGACTCACCCTGCCCCGATTAACGTTGGA 421
Query 61 CTGGAACCCTTGGATAATCGGCG--GACGGGATTCCCACCCGTCACACGCTACTCATGCC 118
| ||||||||||| |||||| || | ||| | ||| | | || |||||||| |
Sbjct 420 CAGGAACCCTTGGTCTTTCGGCGTGGAGGTTTTTCACCCCCATTAT-CGTTACTCATGTC 362
Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176
||||| |||| | || | ||||| || | || | || ||||| | || |||
Sbjct 361 AACATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCAACGGCTTACA 304
Query 177 CGACGCTCCCCTACC---CAACCACACAGGT---TGCCAC---AGCTTCGGCGGATAACT 227
||||||| ||||| ||| | ||| || ||| | |||||||| || || |
Sbjct 303 GAACGCTCCTCTACCATGCAAAGA-ACAAGTCTTTGCATCCGTAGCTTCGGTGG-TATGT 246
Query 228 TAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTT 287
| ||||||| || || || |||| | ||| ||| ||||||||||||||| |||||
Sbjct 245 TTAGCCCCGTTAAATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTT 186
Query 288 CAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCC 347
|| |||||||||||| |||||||| |||||| ||||| || |||||||| ||||||
Sbjct 185 AAAAGATGGCTGCTTCTAAGCCAACTTCCTGGCTGTCTGAGCCTTTCCACATCGTTTCCC 126
Query 348 ACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399
||| | ||||| ||| |||||||||| | |||||| ||||||||| ||
Sbjct 125 ACTTAACATACACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCTTTC 74
>seq245534
Length=245
Score = 138 bits (152), Expect = 3e-30
Identities = 132/168 (79%), Gaps = 1/168 (1%)
Strand=Plus/Plus
Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289
||||||| || || || |||| | ||| ||| ||||||||||||||| ||||| |
Sbjct 1 AGCCCCGTTAAATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAA 60
Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349
| |||||||||||| |||||||| |||| | |||||| || ||||||| ||||||||
Sbjct 61 ATGATGGCTGCTTCTAAGCCAACATCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCAC 120
Query 350 TGAGTCA-CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
| | || ||||| ||| |||||||||| | |||||| |||||||||
Sbjct 121 TTAACCATACACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 168
>seq392608
Length=818
Score = 114 bits (126), Expect = 3e-23
Identities = 115/146 (79%), Gaps = 5/146 (3%)
Strand=Plus/Minus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCT 317
|| ||| |||||||| ||||||||||||| || || ||||||||||||||||||| ||||
Sbjct 763 CTCGACTAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCT 704
Query 318 GGTTGTCTACGCA---ACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGC 374
| |||||| ||| | || | | |||| | ||| ||| | || ||| |||||||
Sbjct 703 AGCTGTCTATGCAGACAAACCTCGTTCTTT-CAACTTAGTATATATTTGGGGACCTTAGC 645
Query 375 TGATGATCTGGGCTGTTTCCCTCTCG 400
||||| |||||| | |||||||||||
Sbjct 644 TGATGGTCTGGGTTCTTTCCCTCTCG 619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1171411688448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |