Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq12755 279 8e-73
seq196718 181 2e-43
seq306624 176 7e-42
seq186018 172 9e-41
seq196743 152 8e-35
seq196742 136 6e-30
seq196744 132 7e-29
>seq12755
Length=1866
Score = 279 bits (308), Expect = 8e-73
Identities = 222/267 (83%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68
||||| |||||||||| |||||| ||||||| ||| ||| ||||| || || ||||
Sbjct 1866 GCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCATCCGAACGTAGCTACCGGGCAATGCC 1807
Query 69 CTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC 128
|||| ||||| | ||||||||||| ||||| | ||||||||||||||| | |
Sbjct 1806 ACTGGCGTGACAACCCGAACACCAGAGGTTCGTCCACTCTGGTCCTCTCGTACTAGGAGC 1747
Query 129 AGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188
|| ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct 1746 AGATCCTCTCAAATTTCCAACGCCCACGGTAGATAGGGACCGAACTGTCTCACGACGTTC 1687
Query 189 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248
| |||||||||||||| ||||||||| ||||||||||| |||||| |||||| |||||
Sbjct 1686 TAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACCCTTAGGACCTGCTTCA 1627
Query 249 GCCCCAGGATGAGACGAGCCGACATCG 275
|||| ||||||||| ||||||||||||
Sbjct 1626 GCCCTAGGATGAGATGAGCCGACATCG 1600
>seq196718
Length=378
Score = 181 bits (200), Expect = 2e-43
Identities = 126/143 (88%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 133 CCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAA 192
|||||||| | || ||||||||| | |||||||||||||||||||| ||||||||| ||
Sbjct 378 CCTCTCAATTCTCAAACGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAA 319
Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCC 252
|||||||||||| || |||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 318 CCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGACTTCAGCCC 259
Query 253 CAGGATGAGACGAGCCGACATCG 275
||||||| || ||||||||||||
Sbjct 258 CAGGATGTGATGAGCCGACATCG 236
>seq306624
Length=388
Score = 176 bits (194), Expect = 7e-42
Identities = 105/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 388 GACCGAACTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAG 329
Query 226 CCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct 328 CCCAACCCTTGGGACCTTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 279
>seq186018
Length=271
Score = 172 bits (190), Expect = 9e-41
Identities = 115/128 (90%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207
||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||| ||
Sbjct 271 ACGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCGCGTACC 212
Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267
|||||| ||||||||||| |||||||||||| ||||||||||||||||| || ||||
Sbjct 211 ACTTTAAATGGCGAACAGCCATACCCTTGGGACCGACTTCAGCCCCAGGATGTGATGAGC 152
Query 268 CGACATCG 275
||||||||
Sbjct 151 CGACATCG 144
>seq196743
Length=230
Score = 152 bits (168), Expect = 8e-35
Identities = 134/167 (80%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75
|||||||||| |||||| ||||| | || ||| ||||| ||| || |||| ||||
Sbjct 167 GCTTAGATGCTTTCAGCGGTTATCTTTCCCGAACATAGCTACCCGGCAATGCCACTGGCG 108
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
||||| || ||||||||||| ||||| ||||||||||||||||| | |||| |||
Sbjct 107 TGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCT 48
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
||||||| || ||||||||| | |||||||||||||||||||| ||
Sbjct 47 CTCAAATCTCAAACGCCCACGGCAGATAGGGACCGAACTGTCTCACG 1
>seq196742
Length=580
Score = 136 bits (150), Expect = 6e-30
Identities = 132/170 (78%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60
||||| |||||| |||||||||| |||||| |||||| |||| ||| ||||| ||
Sbjct 170 CGAGGCCTGCTTCGCGCTTAGATGCTTTCAGCGCTTATCAGTTCCGAACGTAGCTACCGG 111
Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120
|| |||| |||||| ||||| | |||||| |||| || || ||||||||||||||
Sbjct 110 GCAATGCCATTGGCATGACAACCCGAACACCAGCGGTTCGTTCACTCCGGTCCTCTCGTA 51
Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCG 170
||| | || | |||||||| | || ||||||||| | |||||||||||
Sbjct 50 CTAGGAGCAACCCCTCTCAATTCTCAAACGCCCACGGCAGATAGGGACCG 1
>seq196744
Length=317
Score = 132 bits (146), Expect = 7e-29
Identities = 126/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68
||||| |||||||||| |||||| ||||| |||| ||| ||||| || || ||||
Sbjct 161 GCTTCCCGCTTAGATGCTTTCAGCGGTTATCGATTCCGAACGTAGCTACCGGGCAATGCC 102
Query 69 CTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC 128
|||||| ||||| | |||||| |||| ||||| ||||||||||||||||| | |
Sbjct 101 ATTGGCATGACAACCCGAACACCAGCGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGC 42
Query 129 AGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACC 169
||| |||||||| ||| ||||||||| | ||||||||||
Sbjct 41 AGCCCCTCTCAATCATCCAACGCCCACGGCAGATAGGGACC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 776825102872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |