Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq478353 244 2e-62 seq35889 217 3e-54 seq424977 178 2e-42 seq257960 174 3e-41 seq443020 172 1e-40 seq199094 158 2e-36 seq492919 129 1e-27 seq137937 118 2e-24 seq266510 116 7e-24 >seq478353 Length=548 Score = 244 bits (270), Expect = 2e-62 Identities = 253/325 (78%), Gaps = 11/325 (3%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||| ||||| | | |||||||||| ||||| |||| ||||| | Sbjct 130 AGCGCATACGGTGGATGC-TTGGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGAAA 188 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||||| ||||||| ||||||||||| |||| || |||||||| ||||| | Sbjct 189 AGCTTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCACC 248 Query 121 ---CCT---TTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAAC 174 | | || ||| || | |||||||||||||| | |||||||| || |||| Sbjct 249 TAACATAAGTTAGGT-ATCTTAAGCTGAATACATAGGCTTAAGAAGCGAACCAGGGGAAC 307 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| Sbjct 308 TGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAG 367 Query 235 CGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGG 294 |||| |||| |||| ||| | || |||| || ||| |||| ||||||||| | Sbjct 368 CGAACGGGGACCAGCCCTTAAGCTGTA-TTGA--TGTTAGCGGAACGCTCTGGAAAGTGC 424 Query 295 AGCCATAGCGGGTGATAGCCCCGTA 319 ||||||| |||||||||||| ||| Sbjct 425 GGCCATAGTGGGTGATAGCCCTGTA 449 >seq35889 Length=586 Score = 217 bits (240), Expect = 3e-54 Identities = 244/318 (77%), Gaps = 9/318 (3%) Strand=Plus/Minus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 ||| ||||||||||||||| || ||||||||||||||||| || |||||||||||| Sbjct 559 ACACGGTGGATGCCTTGGCAGTTGGAGGCGATGAAGGACGTATTAACTTGCGATAAGCCT 500 Query 66 CGGGGAGTGAGCAAACA-CACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTT 124 | || || ||| | ||||| || | ||||||||||||||||||||| | | Sbjct 499 AGTCAAGCTAGTAAAAAGCACTT-GAGACTAGGATTTCCGAATGGGGAAACCCACCTGCT 441 Query 125 TG--GGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACAT 182 || ||| || | |||||||||||||| | | |||||||||| |||||||||||| Sbjct 440 TGCAGGT-ATCGTTAACTGAATACATAGGTTAACGAGGCGAACGCGGAGAACTGAAACAT 382 Query 183 CTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGG 242 ||||||| | | ||||||||||||||||||||||||| ||||||| |||||||||||| | Sbjct 381 CTAAGTACCCGTAGGAAAAGAAATCAACCGAGATTCCGAAAGTAGCGGCGAGCGAAATCG 322 Query 243 GATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCT-CTGGAAATAGGAGCCATA 301 || |||| ||| || | || | || || ||||| || ||||||| | | ||| Sbjct 321 GAACAGCCCTTA--AGCTTATT-ATGTGTTAATGGAAGGCTGCTGGAAAGCGCCACGATA 265 Query 302 GCGGGTGATAGCCCCGTA 319 ||||||||| |||||| Sbjct 264 CAGGGTGATAGTCCCGTA 247 >seq424977 Length=310 Score = 178 bits (196), Expect = 2e-42 Identities = 220/296 (74%), Gaps = 14/296 (5%) Strand=Plus/Plus Query 31 AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGA 90 ||||||||||||||||| || ||||||| |||| || ||| || || | ||||| Sbjct 5 AGGCGATGAAGGACGTAATAACTTGCGAAAAGCGTTGGCGAGCTAGTAATAAGCATTTGA 64 Query 91 TCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG---GGTCATTGCATGC--TGAATA 145 | ||| ||||||||||||||||||||| | |||||| ||||| |||||| Sbjct 65 GCTAACGATATCCGAATGGGGAAACCCGGCCACATAAGTGGTCAT--CATGCAGTGAATA 122 Query 146 CATAG--GTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGA 203 ||||| | ||| | |||||| || ||||||||||||||||||| | ||||||||| Sbjct 123 CATAGCTGCATG--AGGCGAACCTGGGGAACTGAAACATCTAAGTACCCAGAGGAAAAGA 180 Query 204 AATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGATAGT 263 ||||||||||||||||| ||||| |||||||||| ||||| |||| ||| | | Sbjct 181 AATCAACCGAGATTCCCCTAGTAGCGGCGAGCGAACGGGGATTAGCCCTTAAG---TCTA 237 Query 264 TGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319 || || ||||||||| |||||| ||| | |||||||||||||||| Sbjct 238 TGGGGTGTTAGTGGAATGAGTTGGAAAGCTCAGCGGCACAGGGTGATAGCCCCGTA 293 >seq257960 Length=1007 Score = 174 bits (192), Expect = 3e-41 Identities = 228/313 (73%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| | | ||||||||||||||||| || ||||||| |||| || Sbjct 299 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAGGACGTAATAACTTGCGAAAAGCGTTGGC 358 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC--CCTTTGG 127 ||| || || | ||||| | ||| ||||||||||||||||| | | | Sbjct 359 GAGCTAGTAATAAGCATTTGAGCTAACGATATCCGAATGGGGAAACCCACATGCATAAGC 418 Query 128 GTC-ATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAA 186 | || || ||||||||||| || | || ||| ||| |||||||||||||||| Sbjct 419 ATGTATCACAACATGAATACATAGTGTTGTGAGGCAAACCCGGGGAACTGAAACATCTAA 478 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||| | | |||||||||||||||||||||||||| ||||| |||||||||| ||||| Sbjct 479 GTACCCGGAGGAAAAGAAATCAACCGAGATTCCCCTAGTAGCGGCGAGCGAACGGGGATT 538 Query 247 AGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGG 306 |||| ||| | | || || ||||||||| |||||| ||| | ||| Sbjct 539 AGCCCTTAAG---TCTATGGGGTGTTAGTGGAATGTGTTGGAAAGCACAGCGGCACAGGG 595 Query 307 TGATAGCCCCGTA 319 ||||||||||||| Sbjct 596 TGATAGCCCCGTA 608 >seq443020 Length=407 Score = 172 bits (190), Expect = 1e-40 Identities = 236/322 (73%), Gaps = 16/322 (5%) Strand=Plus/Plus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 ||| ||||||||||||||| | | ||||||||||||||||| || |||||||||||| Sbjct 3 ACACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAGGACGTATTAACTTGCGATAAGCCC 62 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTT- 124 | || || ||| | |||| | ||||||||||||||||||||| ||| Sbjct 63 AGATTAGGCAGTAAAAGCCACTTGAGTCTGGGATTTCCGAATGGGGAAACCCA---CTTG 119 Query 125 --TGGGTCATTG-CATG--CTGAATACATAGGT--ATGCAAAGCGAACGCGGCGAACTGA 177 | | | | ||| |||||||||||||| ||| | || ||| || ||||||| Sbjct 120 CATAAGCAAGTATCATTAACTGAATACATAGGTTAATG--AGGCAAACCGGGGGAACTGA 177 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 |||||||||||| | ||||| ||||||||||||||||||| ||||| ||||||||| Sbjct 178 AACATCTAAGTACCCCGAGGAAGAGAAATCAACCGAGATTCCGGTAGTAGCGGCGAGCGA 237 Query 238 AATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGC 297 || |||| |||| ||| || ||||| | ||| |||| ||||||| ||| Sbjct 238 AACCGGATTAGCCCTTA--AGCTAGTT-CTGCGTTAGGTGAATGTACTGGAAAGTACAGC 294 Query 298 CATAGCGGGTGATAGCCCCGTA 319 ||| |||||||||||||||| Sbjct 295 GATACAGGGTGATAGCCCCGTA 316 >seq199094 Length=690 Score = 158 bits (174), Expect = 2e-36 Identities = 229/316 (72%), Gaps = 12/316 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||| ||| | | |||||||||||||||| || |||| ||||||| ||| Sbjct 409 GGTGGATGCCTAGGCAGTCAGAGGCGATGAAGGACGTGTTAATCTGCGTTAAGCTGTGGG 350 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCC--CTTTG- 126 |||| ||| | | || |||| ||||||||||||||||| ||||| | || | Sbjct 349 GAGTTGATAAAAAG-CGTTAATCCACAGATTTCCGAATGGGGGAACCCACCTTACTAAGT 291 Query 127 --GGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCT 184 ||| || | ||||||||||| | | |||||||| || |||||||||||||| Sbjct 290 AAGGT-ATCGTTAAGTGAATACATAGCTTAACGAAGCGAACCGGGAGAACTGAAACATCT 232 Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||||| | ||||||||||||||| ||||| ||| ||||| |||||||||| ||| Sbjct 231 AAGTACCCCGAGGAAAAGAAATCAATAGAGATACCCTTAGTAGCGGCGAGCGAACGGGGT 172 Query 245 TGAGCCTTTACG-AGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGC 303 |||| ||| | || | | ||| | || ||||| |||||||| | ||| Sbjct 171 CTAGCCCTTAAGCAGTT--TGGAA--GTTAATGGAAGAATCTGGAAAGTTTCACGATACA 116 Query 304 GGGTGATAGCCCCGTA 319 ||||||||| |||||| Sbjct 115 GGGTGATAGTCCCGTA 100 >seq492919 Length=384 Score = 129 bits (142), Expect = 1e-27 Identities = 178/247 (72%), Gaps = 18/247 (7%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||| |||||||||||| | | |||||||||||| ||| || ||||| ||||| || Sbjct 129 ATGGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGGCGTGATAAGCTGCGAAAAGCTACG 188 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||| ||||| |||| |||||||| | || | |||||||| ||||| || || Sbjct 189 GGGAC-GAGCACACACCGATTGATCCGTAAATACCTGAATGGGGCAACCCA---CTATG- 243 Query 128 GTCATTGCATGCTGAATACA----TAGGTATGCAAAGCGAACGCGGCGAACTGAAACATC 183 ||| | | | |||| ||||| ||||| | || ||||||||||||| Sbjct 244 ----TTGAAGACATAGTACACCGATAGGTGGGCAAACC-----CGCTGAACTGAAACATC 294 Query 184 TAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGG 243 ||||||| | |||| |||||| ||| | |||||| ||||||||||||||||| || Sbjct 295 TAAGTAGGCGGAGGAGAAGAAAACAAAAGTGATTCCGTAAGTAGTGGCGAGCGAACGCGG 354 Query 244 ATGAGCC 250 || |||| Sbjct 355 ATTAGCC 361 >seq137937 Length=258 Score = 118 bits (130), Expect = 2e-24 Identities = 153/207 (74%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68 |||||||||||||||| ||| |||||||||||||||| || ||||| |||| || Sbjct 53 TGGTGGATGCCTTGGCAGTTAGAGGCGATGAAGGACGTGTTAATCTGCGAAAAGCGTTGG 112 Query 69 GGAG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC--CCTTT 125 ||| ||| ||| || || | || ||| ||||||||||||||||| || | Sbjct 113 TGAGGTGATAAAA-ACCGTTATAGCCAACGATGTCCGAATGGGGAAACCCACTTACCATA 171 Query 126 GGGTC---ATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACAT 182 ||| || || ||||||||||| ||| | |||||||| || |||||||||||| Sbjct 172 AGGTAGGTATCATATAGTGAATACATAGCTATACGAAGCGAACCGGGAGAACTGAAACAT 231 Query 183 CTAAGTAGCTGCAGGAAAAGAAATCAA 209 || |||| | ||||||||||||||| Sbjct 232 CTCAGTACCCCTAGGAAAAGAAATCAA 258 >seq266510 Length=454 Score = 116 bits (128), Expect = 7e-24 Identities = 135/180 (75%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 140 TGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAA 199 ||||||||||| ||| |||||||| || ||||||||||||||||||| | ||||| Sbjct 424 TGAATACATAGCTATATGAAGCGAACCGGGAGAACTGAAACATCTAAGTACCCCGAGGAA 365 Query 200 AAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGA 259 |||||||||||||||||| | ||||| |||||||||| | || |||||| || Sbjct 364 AAGAAATCAACCGAGATTTCGTTAGTAGCGGCGAGCGAACGCGAATCAGCCTT---AAGC 308 Query 260 TAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319 | ||| | |||| |||| |||||||| | | ||| ||||||||| |||||| Sbjct 307 TTATTG-GGCGCTAGTAGAATGTTCTGGAAAGGACAACGATACAGGGTGATAGTCCCGTA 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913573789632