Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq466164 100 9e-17 seq520028 91.5 5e-14 seq474392 86.0 2e-12 seq516139 82.4 3e-11 >seq466164 Length=1079 Score = 100 bits (110), Expect = 9e-17 Identities = 161/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 14135 AAGCCGAACCTGTTCTACAACAAGCTGTTCTGCGGATTGGGAACGATCCCCTTACCCAAG 14194 ||||| ||| ||||||||| |||| | || | |||| || | |||| ||| Sbjct 810 AAGCCAAACTTGTTCTACACTAAGCAATCAATCGCAATGGGTACTGTAGAGCTACCAAAG 869 Query 14195 TTACACAGCATCGATTCTGCGG---TCGCTA--CCTATG-AAGGCTTCTCTATTCGCGTA 14248 | ||||||||||||||||| | | ||| ||| | ||| | |||||| || Sbjct 870 CTGCACAGCATCGATTCTGCTGTAATGTCTAGCGCTAAGTCAGGTCTAAGTATTCGTGTT 929 Query 14249 CATAAATACGCTGACGGTGACGCCAACAAGCAGATGATGCGCTTCGACCTGCTGCCTGCG 14308 ||||||||| | ||||| ||| |||||||||||||||||||| || | ||||| || Sbjct 930 CATAAATACTCAGACGGACGCGCTAACAAGCAGATGATGCGCTTTGATGTTCTGCCAGCA 989 Query 14309 TATGTG-TGTTACAACCCGCATATgggggggCAGTTCTTCGGTAAT 14353 | || | | ||| |||||||| |||| || |||||||| || ||| Sbjct 990 TTTGCGATCTTA-AACCCGCACATGGCTGGTCAGTTCTTTGGCAAT 1034 Score = 87.8 bits (96), Expect = 6e-13 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 13520 AAATGGTCTGACGTAGCGCAAACCGCTTCCTTCCTGAAAGACCTGGGCATCAATAGCGGT 13579 || ||| ||| ||||||||||| ||||| ||| | |||||| ||||| | |||| | Sbjct 201 AAGTGGAGTGATGTAGCGCAAACGGCTTCATTCTTAAAAGACTTGGGCGT---TAGCACT 257 Query 13580 GAGAAC---TATGCCGTGATGGATCCCTGGGCGGCGCAGCGTCTGGCCGATGCGCAATCA 13636 | || || || || || || || ||||| || ||| | |||| || || ||| || Sbjct 258 ATGGACGCTTACGCAGTTATCGACCCGTGGGCTGCACAGGCTTTGGCTGACGCACAAGCA 317 Query 13637 GGATTACATGTGTCGGAACAACTGGTGCGCACCGCCTGGGAGAATGCCCAGATATCCGGC 13696 || | || | | || | || || || || ||||| |||| ||||| || Sbjct 318 GGCCTTAATACGGCTGATAGCTTAGTACGTACAGCGTGGGAAGATGCTCAGATTTCTAAA 377 Query 13697 AACTTCGGCGGGATACGCGCCCTGATGTCAAACGGTTTGGCATCACGGAC 13746 ||||| || || || ||||| || |||||||||||| | || ||||| || Sbjct 378 AACTTTGGTGGCATTCGCGCGCTAATGTCAAACGGTCTAGCCTCACGCAC 427 >seq520028 Length=356 Score = 91.5 bits (100), Expect = 5e-14 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 10904 GTCAAGCGTCGGCGCATTTACGTTGCGGTGGTGGACGGTGACGGCTTTCTTGAAAAGCCT 10963 |||||||| || || ||||| || | || |||| | | | || ||| | || Sbjct 198 GTCAAGCGCCGCCGTGTTTACTGTGGACTAATGAGCGGTCAAGAGTGGCTAGAAGAACCA 139 Query 10964 AGGCGCATTCCCGGCGAGCATATCCCGCTCATCCCCGTTTACGGTAAGCGCTGGTTTATC 11023 || |||||||| ||||| | || ||||| ||||||||||||||||||||||||||| | Sbjct 138 AGCCGCATTCCTGGCGATTACATACCGCTGATCCCCGTTTACGGTAAGCGCTGGTTTGTT 79 Query 11024 GATGATGTCGAACGGGTCGAGGGGCATATCGCCAAGGCGATGGATCCACAGCGTCTCTAC 11083 ||| | | || || | || || || || ||||| |||||| |||| || || | Sbjct 78 GATAACATGGAGCGCATAGAAGGTCACGCAGCTAAGGCCATGGATGCACAACGACTAGA- 20 Query 11084 AATCTTCA-GGTGTCCATG 11101 || ||| | |||||| ||| Sbjct 19 AAACTTGATGGTGTCAATG 1 >seq474392 Length=272 Score = 86.0 bits (94), Expect = 2e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 9409 CTCCTTTCCCGCTCATCAGCGCGATATGCGTACCAAAGGGATCCCGATGCTCGGGCATGG 9468 ||| ||||| || || ||||| |||||| | || || || | |||||||| |||||||| Sbjct 162 CTCATTTCCAGCCCACCAGCGAGATATGAGAACTAAGGGCTTACCGATGCTTGGGCATGG 221 Query 9469 CCGCATCTATGATTTGGGCGAGGATTTTATCACCTGCGATCCGTT 9513 ||| |||||||| || | ||||| ||||| | || |||||||| Sbjct 222 CCGAATCTATGACATGAGTGAGGACTTTATATCATGTGATCCGTT 266 >seq516139 Length=345 Score = 82.4 bits (90), Expect = 3e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 50942 GTTGACTGCGGGGGAGCAGATTCAAAGGCTATGCGCTCAGCGTTAGCTATTTCAGATATG 51001 ||||| || || ||||||||||| ||||||||||| |||||| | || | | ||| | Sbjct 341 GTTGATTGTGGTGGAGCAGATTCTAAGGCTATGCGTTCAGCGCTTACTGTAGCTGATGTT 282 Query 51002 GCAATTCTTCCGTTTAGACCAAAACGCCGGGACTTGAAAGTAGCACCAGAAATGGCCGAA 51061 || | | || |||||| ||||| | | ||| | ||||| || || | |||||| ||| Sbjct 281 GCCCTATTACCATTTAGAGCAAAAAGAAGAGACCTCAAAGTTGCCCCTGCAATGGCTGAA 222 Query 51062 ATCATTGA 51069 || ||||| Sbjct 221 ATAATTGA 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165755931882576