Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_007902.1
Length=52162
Score E
Sequences producing significant alignments: (Bits) Value
seq466164 100 9e-17
seq520028 91.5 5e-14
seq474392 86.0 2e-12
seq516139 82.4 3e-11
>seq466164
Length=1079
Score = 100 bits (110), Expect = 9e-17
Identities = 161/226 (71%), Gaps = 8/226 (4%)
Strand=Plus/Plus
Query 14135 AAGCCGAACCTGTTCTACAACAAGCTGTTCTGCGGATTGGGAACGATCCCCTTACCCAAG 14194
||||| ||| ||||||||| |||| | || | |||| || | |||| |||
Sbjct 810 AAGCCAAACTTGTTCTACACTAAGCAATCAATCGCAATGGGTACTGTAGAGCTACCAAAG 869
Query 14195 TTACACAGCATCGATTCTGCGG---TCGCTA--CCTATG-AAGGCTTCTCTATTCGCGTA 14248
| ||||||||||||||||| | | ||| ||| | ||| | |||||| ||
Sbjct 870 CTGCACAGCATCGATTCTGCTGTAATGTCTAGCGCTAAGTCAGGTCTAAGTATTCGTGTT 929
Query 14249 CATAAATACGCTGACGGTGACGCCAACAAGCAGATGATGCGCTTCGACCTGCTGCCTGCG 14308
||||||||| | ||||| ||| |||||||||||||||||||| || | ||||| ||
Sbjct 930 CATAAATACTCAGACGGACGCGCTAACAAGCAGATGATGCGCTTTGATGTTCTGCCAGCA 989
Query 14309 TATGTG-TGTTACAACCCGCATATgggggggCAGTTCTTCGGTAAT 14353
| || | | ||| |||||||| |||| || |||||||| || |||
Sbjct 990 TTTGCGATCTTA-AACCCGCACATGGCTGGTCAGTTCTTTGGCAAT 1034
Score = 87.8 bits (96), Expect = 6e-13
Identities = 158/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 13520 AAATGGTCTGACGTAGCGCAAACCGCTTCCTTCCTGAAAGACCTGGGCATCAATAGCGGT 13579
|| ||| ||| ||||||||||| ||||| ||| | |||||| ||||| | |||| |
Sbjct 201 AAGTGGAGTGATGTAGCGCAAACGGCTTCATTCTTAAAAGACTTGGGCGT---TAGCACT 257
Query 13580 GAGAAC---TATGCCGTGATGGATCCCTGGGCGGCGCAGCGTCTGGCCGATGCGCAATCA 13636
| || || || || || || || ||||| || ||| | |||| || || ||| ||
Sbjct 258 ATGGACGCTTACGCAGTTATCGACCCGTGGGCTGCACAGGCTTTGGCTGACGCACAAGCA 317
Query 13637 GGATTACATGTGTCGGAACAACTGGTGCGCACCGCCTGGGAGAATGCCCAGATATCCGGC 13696
|| | || | | || | || || || || ||||| |||| ||||| ||
Sbjct 318 GGCCTTAATACGGCTGATAGCTTAGTACGTACAGCGTGGGAAGATGCTCAGATTTCTAAA 377
Query 13697 AACTTCGGCGGGATACGCGCCCTGATGTCAAACGGTTTGGCATCACGGAC 13746
||||| || || || ||||| || |||||||||||| | || ||||| ||
Sbjct 378 AACTTTGGTGGCATTCGCGCGCTAATGTCAAACGGTCTAGCCTCACGCAC 427
>seq520028
Length=356
Score = 91.5 bits (100), Expect = 5e-14
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 10904 GTCAAGCGTCGGCGCATTTACGTTGCGGTGGTGGACGGTGACGGCTTTCTTGAAAAGCCT 10963
|||||||| || || ||||| || | || |||| | | | || ||| | ||
Sbjct 198 GTCAAGCGCCGCCGTGTTTACTGTGGACTAATGAGCGGTCAAGAGTGGCTAGAAGAACCA 139
Query 10964 AGGCGCATTCCCGGCGAGCATATCCCGCTCATCCCCGTTTACGGTAAGCGCTGGTTTATC 11023
|| |||||||| ||||| | || ||||| ||||||||||||||||||||||||||| |
Sbjct 138 AGCCGCATTCCTGGCGATTACATACCGCTGATCCCCGTTTACGGTAAGCGCTGGTTTGTT 79
Query 11024 GATGATGTCGAACGGGTCGAGGGGCATATCGCCAAGGCGATGGATCCACAGCGTCTCTAC 11083
||| | | || || | || || || || ||||| |||||| |||| || || |
Sbjct 78 GATAACATGGAGCGCATAGAAGGTCACGCAGCTAAGGCCATGGATGCACAACGACTAGA- 20
Query 11084 AATCTTCA-GGTGTCCATG 11101
|| ||| | |||||| |||
Sbjct 19 AAACTTGATGGTGTCAATG 1
>seq474392
Length=272
Score = 86.0 bits (94), Expect = 2e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 9409 CTCCTTTCCCGCTCATCAGCGCGATATGCGTACCAAAGGGATCCCGATGCTCGGGCATGG 9468
||| ||||| || || ||||| |||||| | || || || | |||||||| ||||||||
Sbjct 162 CTCATTTCCAGCCCACCAGCGAGATATGAGAACTAAGGGCTTACCGATGCTTGGGCATGG 221
Query 9469 CCGCATCTATGATTTGGGCGAGGATTTTATCACCTGCGATCCGTT 9513
||| |||||||| || | ||||| ||||| | || ||||||||
Sbjct 222 CCGAATCTATGACATGAGTGAGGACTTTATATCATGTGATCCGTT 266
>seq516139
Length=345
Score = 82.4 bits (90), Expect = 3e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 50942 GTTGACTGCGGGGGAGCAGATTCAAAGGCTATGCGCTCAGCGTTAGCTATTTCAGATATG 51001
||||| || || ||||||||||| ||||||||||| |||||| | || | | ||| |
Sbjct 341 GTTGATTGTGGTGGAGCAGATTCTAAGGCTATGCGTTCAGCGCTTACTGTAGCTGATGTT 282
Query 51002 GCAATTCTTCCGTTTAGACCAAAACGCCGGGACTTGAAAGTAGCACCAGAAATGGCCGAA 51061
|| | | || |||||| ||||| | | ||| | ||||| || || | |||||| |||
Sbjct 281 GCCCTATTACCATTTAGAGCAAAAAGAAGAGACCTCAAAGTTGCCCCTGCAATGGCTGAA 222
Query 51062 ATCATTGA 51069
|| |||||
Sbjct 221 ATAATTGA 214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 165755931882576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |