Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 226 2e-54
seq231358 145 6e-30
seq103378 109 4e-19
seq28532 86.0 5e-12
>seq44246
Length=4029
Score = 226 bits (250), Expect = 2e-54
Identities = 835/1291 (65%), Gaps = 38/1291 (3%)
Strand=Plus/Minus
Query 65423 TTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGT 65482
|||| || |||||||| || ||||| || || ||| ||||||||| ||| ||
Sbjct 1762 TTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCC 1703
Query 65483 TCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACC 65542
|| | ||| || ||||||| || || ||||| || || || || ||||| || || | |
Sbjct 1702 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 1643
Query 65543 AACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCAC 65602
| || ||| | || |||| | | | || || | || | ||||| ||||
Sbjct 1642 AGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1583
Query 65603 ATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCC 65662
| ||| | | || | || | ||||| || | || ||| | || | ||| |
Sbjct 1582 A--GGTCGGTGGGCGTCTTCTCC----CACATGTCGTACTGGAGGATGCCCTTGCTGACG 1529
Query 65663 GGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCG 65722
|| || || | | | ||||| ||| ||| ||| |||| ||||||| |||
Sbjct 1528 GGGGAGCCTCGTACG-TGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGCTGGCCTCC 1470
Query 65723 AGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTC 65782
|| ||||| | || |||||||| || || | || || | ||||| |||
Sbjct 1469 AGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTT 1410
Query 65783 TCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATG 65842
|| | || || |||||||| || | ||||||||| || || || || ||||||||
Sbjct 1409 TCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATC 1350
Query 65843 GGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATA 65902
|| | || ||| ||||| | ||||| || || |||||| | || || || ||
Sbjct 1349 GGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAATCTCTATG 1290
Query 65903 ATGCGATTCAAATTGCGTGTC-ACCACATG---CACGATACGTCGCAATTGTTCGAAATC 65958
|| |||| || | | | | ||| | ||| | || || || || | ||| ||
Sbjct 1289 ATCTTGTTCAGGTT-CTTCACGATCACTTTGGTCAC-AGAC-TC-CAGTTTCTTGAAGTC 1234
Query 65959 AAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018
|||| | || ||||| ||| || ||| ||| || || | || ||
Sbjct 1233 AAAA------GTCCGCTCGGGGGTGACGTACATG------TTGAGA---GCGATGGAGGC 1189
Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078
|| || || ||||| | ||| || | || || || || ||||| ||||| || ||
Sbjct 1188 CAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTT 1129
Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138
||||| ||||| |||| ||||| || || ||||| | ||||| || || |||||
Sbjct 1128 GCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 1069
Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198
|| ||||||||| ||||| | ||| |||||||| |||||||||||||| | |
Sbjct 1068 CAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTG 1009
Query 66199 TGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAA 66258
||||||||| ||| ||| || | || || || || |||||| | || ||
Sbjct 1008 AGCCTTCACCACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAA 949
Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318
|| ||||| ||| ||| | || | || | ||||||||||| ||||| ||
Sbjct 948 CTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTC 889
Query 66319 ACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA 66376
| || ||| ||| ||| || || || || ||||| | | |||||||||||
Sbjct 888 CTGGT--TGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGAAGAGA 831
Query 66377 TCGCGTGCTCGTTGCTCCTCAAT-GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGAT 66435
|| | |||| |||||||| | ||||| || || || || ||||| || || |
Sbjct 830 TCTCTGGCTCTCTGCTCCTCCTTCCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCGAACAC 772
Query 66436 GTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495
||| ||||| || |||||||| |||||||| | ||| || ||| ||| || ||
Sbjct 771 GTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTG 712
Query 66496 GTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTT 66555
|||||| ||||| || |||||| |||| | || ||| || || |||||||| || ||
Sbjct 711 GTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTT 652
Query 66556 GCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAA 66614
||| ||||||||| |||| | | ||| || | || || | || || ||| |
Sbjct 651 GCCGTTGGTGCCGGCGAT-GTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGA 593
Query 66615 TACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAA 66674
| || || |||| ||| |||||| ||||| | || || | | ||||| || |
Sbjct 592 TTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGA 533
Query 66675 TGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705
|| ||| |||| ||||| || ||| ||||
Sbjct 532 TGCTGTCGTCCTTCATGGTGAGCAGGAAGCA 502
>seq231358
Length=2322
Score = 145 bits (160), Expect = 6e-30
Identities = 106/123 (86%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| |||||||||||| ||| ||||||| || || ||||| ||||||||||
Sbjct 1147 TGGAGCGCTTCATGCAGGAGGTGCAGGTGACGGAGGCCCGCTGCTTCTATGGCTTCCAGA 1088
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
| ||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||
Sbjct 1087 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACGTACATCAGGG 1028
Query 61376 AGC 61378
|||
Sbjct 1027 AGC 1025
>seq103378
Length=1867
Score = 109 bits (120), Expect = 4e-19
Identities = 120/160 (75%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| || || || ||||||||||| ||| | ||||| |||| |||||| ||
Sbjct 1786 GGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTG 1727
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| | ||||| || |||||||| | ||||||||| || || || ||| ||
Sbjct 1726 GTTGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTG 1667
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208
||||| |||||||||| ||| || | |||||||||
Sbjct 1666 TGACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACC 1627
>seq28532
Length=8763
Score = 86.0 bits (94), Expect = 5e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | || || || | |||||| |||||||||| ||| ||||
Sbjct 801 CAGGAGGTGCAGGTCCCTGAAGCTCGCTCCTTCTACAGCTTCCAGATCCTCATAGAGACG 860
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||||||||||||||| | |||||| | || ||||| |||||
Sbjct 861 GTTCACTCGGAGATGTACAGCATGCTCATCAACACCTACATAAGGGA 907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395021753629280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |