Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq44246 226 2e-54 seq231358 145 6e-30 seq103378 109 4e-19 seq28532 86.0 5e-12 >seq44246 Length=4029 Score = 226 bits (250), Expect = 2e-54 Identities = 835/1291 (65%), Gaps = 38/1291 (3%) Strand=Plus/Minus Query 65423 TTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGT 65482 |||| || |||||||| || ||||| || || ||| ||||||||| ||| || Sbjct 1762 TTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCC 1703 Query 65483 TCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACC 65542 || | ||| || ||||||| || || ||||| || || || || ||||| || || | | Sbjct 1702 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 1643 Query 65543 AACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCAC 65602 | || ||| | || |||| | | | || || | || | ||||| |||| Sbjct 1642 AGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1583 Query 65603 ATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCC 65662 | ||| | | || | || | ||||| || | || ||| | || | ||| | Sbjct 1582 A--GGTCGGTGGGCGTCTTCTCC----CACATGTCGTACTGGAGGATGCCCTTGCTGACG 1529 Query 65663 GGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCG 65722 || || || | | | ||||| ||| ||| ||| |||| ||||||| ||| Sbjct 1528 GGGGAGCCTCGTACG-TGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGCTGGCCTCC 1470 Query 65723 AGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTC 65782 || ||||| | || |||||||| || || | || || | ||||| ||| Sbjct 1469 AGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTT 1410 Query 65783 TCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATG 65842 || | || || |||||||| || | ||||||||| || || || || |||||||| Sbjct 1409 TCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATC 1350 Query 65843 GGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATA 65902 || | || ||| ||||| | ||||| || || |||||| | || || || || Sbjct 1349 GGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAATCTCTATG 1290 Query 65903 ATGCGATTCAAATTGCGTGTC-ACCACATG---CACGATACGTCGCAATTGTTCGAAATC 65958 || |||| || | | | | ||| | ||| | || || || || | ||| || Sbjct 1289 ATCTTGTTCAGGTT-CTTCACGATCACTTTGGTCAC-AGAC-TC-CAGTTTCTTGAAGTC 1234 Query 65959 AAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGC 66018 |||| | || ||||| ||| || ||| ||| || || | || || Sbjct 1233 AAAA------GTCCGCTCGGGGGTGACGTACATG------TTGAGA---GCGATGGAGGC 1189 Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078 || || || ||||| | ||| || | || || || || ||||| ||||| || || Sbjct 1188 CAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTT 1129 Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138 ||||| ||||| |||| ||||| || || ||||| | ||||| || || ||||| Sbjct 1128 GCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 1069 Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198 || ||||||||| ||||| | ||| |||||||| |||||||||||||| | | Sbjct 1068 CAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTG 1009 Query 66199 TGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAA 66258 ||||||||| ||| ||| || | || || || || |||||| | || || Sbjct 1008 AGCCTTCACCACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAA 949 Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318 || ||||| ||| ||| | || | || | ||||||||||| ||||| || Sbjct 948 CTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTC 889 Query 66319 ACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA 66376 | || ||| ||| ||| || || || || ||||| | | ||||||||||| Sbjct 888 CTGGT--TGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGAAGAGA 831 Query 66377 TCGCGTGCTCGTTGCTCCTCAAT-GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGAT 66435 || | |||| |||||||| | ||||| || || || || ||||| || || | Sbjct 830 TCTCTGGCTCTCTGCTCCTCCTTCCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCGAACAC 772 Query 66436 GTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTG 66495 ||| ||||| || |||||||| |||||||| | ||| || ||| ||| || || Sbjct 771 GTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTG 712 Query 66496 GTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTT 66555 |||||| ||||| || |||||| |||| | || ||| || || |||||||| || || Sbjct 711 GTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTT 652 Query 66556 GCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAA 66614 ||| ||||||||| |||| | | ||| || | || || | || || ||| | Sbjct 651 GCCGTTGGTGCCGGCGAT-GTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGA 593 Query 66615 TACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAA 66674 | || || |||| ||| |||||| ||||| | || || | | ||||| || | Sbjct 592 TTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGA 533 Query 66675 TGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 || ||| |||| ||||| || ||| |||| Sbjct 532 TGCTGTCGTCCTTCATGGTGAGCAGGAAGCA 502 >seq231358 Length=2322 Score = 145 bits (160), Expect = 6e-30 Identities = 106/123 (86%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||||||||| ||| ||||||| || || ||||| |||||||||| Sbjct 1147 TGGAGCGCTTCATGCAGGAGGTGCAGGTGACGGAGGCCCGCTGCTTCTATGGCTTCCAGA 1088 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||| Sbjct 1087 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACGTACATCAGGG 1028 Query 61376 AGC 61378 ||| Sbjct 1027 AGC 1025 >seq103378 Length=1867 Score = 109 bits (120), Expect = 4e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || || ||||||||||| ||| | ||||| |||| |||||| || Sbjct 1786 GGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTG 1727 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| || |||||||| | ||||||||| || || || ||| || Sbjct 1726 GTTGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTG 1667 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||| |||||||||| ||| || | ||||||||| Sbjct 1666 TGACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACC 1627 >seq28532 Length=8763 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | || || || | |||||| |||||||||| ||| |||| Sbjct 801 CAGGAGGTGCAGGTCCCTGAAGCTCGCTCCTTCTACAGCTTCCAGATCCTCATAGAGACG 860 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||||||||||||||| | |||||| | || ||||| ||||| Sbjct 861 GTTCACTCGGAGATGTACAGCATGCTCATCAACACCTACATAAGGGA 907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395021753629280