Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq450991 230 7e-56 seq509368 205 3e-48 seq522123 147 7e-31 seq507726 113 1e-20 seq505753 96.9 1e-15 >seq450991 Length=1254 Score = 230 bits (254), Expect = 7e-56 Identities = 557/833 (67%), Gaps = 28/833 (3%) Strand=Plus/Minus Query 2100 TCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGA 2159 ||||||||||||||||||||| ||||| || |||| | | | | | ||||| Sbjct 949 TCCAATGATGAACATCATCAATGGTGGCGAACATGCAGATAACTCTGTAGATATTCAAGA 890 Query 2160 ATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGA 2219 |||||||| ||| | ||| || || ||| |||| || || ||| || || Sbjct 889 GTTTATGATCCAACCAGTTGGCGCTAAAAACTTCCGTGAAGGTCTACGCATGGGCGCAGA 830 Query 2220 AATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGA 2279 ||| || ||| || ||| | || |||| | || | |||||| |||||||| Sbjct 829 AATATTTCACAGCCTAGCTAAAGTACTAAAAGCAGACGGTCACTCAACAGCGGTAGGTGA 770 Query 2280 CGAAGGTGGTTTCGCACCT--CGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATC 2337 |||||||||||| ||||| | || | | ||| |||| | | | | || | Sbjct 769 CGAAGGTGGTTTTGCACCAAACCTTGCATCT-AAC-GAAGCGGCACTAGCTGCAATTAAA 712 Query 2338 AAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTAT--TTATCGGACTTGACT 2395 |||| | | | ||| || || | | |||||||||| | ||| || ||||| | Sbjct 711 GTAGCTGTTGCAAATGCAGGCTACGAGCTAGGTAAAGACATTACATTAGCG--CTTGATT 654 Query 2396 GTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAG 2455 |||| | ||||| || ||||| |||| || ||||| || || ||| Sbjct 653 GTGCTGCCTCTGAGTTTTACGACAAAGAAGCAAATATTTAC---------AATCTTAAAG 603 Query 2456 GTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTA 2515 |||||||| |||| ||| ||| |||| | | || | | |||| || | Sbjct 602 GTGAAGGCAAAAA-GTTC--ACTTCTGAAGAATTTAACTTCTTCTTACAAGATTTAACTC 546 Query 2516 ACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGG-TTGG 2574 | | ||||||||| | ||||||||||||| | || || |||||||| || || | Sbjct 545 AGCAGTACCCAATCGTGTCTATCGAAGATGGCCTTGATGAGTCTGACTGGGATGGCTTTG 486 Query 2575 AAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTA 2634 | | | ||| ||| | |||| |||| | ||||| || |||||||| || || ||| Sbjct 485 CACAC-CAAACTAAACTAATGGGTGATAAAATCCAATTAGTGGGTGACGATTTGTTTGTA 427 Query 2635 ACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT---GCTAACTCAATCCTT 2691 || || ||| | || ||| || | || ||| | |||||||||||| | Sbjct 426 ACCAATACTA---AGATTTTAAAGCGTGGTATCGACAACGGTATTGCTAACTCAATCTTA 370 Query 2692 ATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAA 2751 || || |||||||||| ||| |||| ||||| || || | || || ||||||| ||| Sbjct 369 ATTAAGTTTAACCAAATTGGTTCTTTAACTGAGACATTAGCTGCAATTAAAATGGCTAAA 310 Query 2752 GAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATC 2811 || ||||| | ||||| || | || || |||||||| ||||| ||||||||||| || Sbjct 309 GATGCTGGTTTCACAGTTGTTATCTCTCATCGTTCAGGCGAAACAGAAGATTCAACCATT 250 Query 2812 GCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACT 2871 |||||| | ||||| | || || |||||||| || || |||||||| ||| || Sbjct 249 GCTGATTTAGCAGTAGGTACAGCTGCAGGTCAAATCAAAACTGGTTCATTAAGCCGTTCT 190 Query 2872 GACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGA 2924 || ||| ||||||| ||||||||||| |||||||| ||||| ||| | || || Sbjct 189 GATCGTGTTGCTAAGTACAACCAATTTCTTCGTATTGAAGAGCAATTAGGCGA 137 >seq509368 Length=480 Score = 205 bits (226), Expect = 3e-48 Identities = 282/392 (72%), Gaps = 2/392 (1%) Strand=Plus/Minus Query 2519 AATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAAT 2578 |||| || || ||| |||||||||| ||| | || || || ||||| |||||||||| Sbjct 449 AATATCCTATTATCTCTATCGAAGACGGTCTTGATGAGTCTGATTGGGATGGTTGGAAAT 390 Query 2579 CTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTA 2638 | | ||||| | |||||| ||||||||| ||||||||||| || || || || || | Sbjct 389 ATTTGACTGAGCAGATTGGTGATAAAGTTCAGTTGGTTGGTGATGATTTATTTGTGACCA 330 Query 2639 ACACTGCTTACCTTGAAAAAGG-TATTGCAGAACACGCTGCTAACTCAATCCTTATCAAA 2697 | ||||| | |||| || ||| ||||| | || ||| || |||| | || || Sbjct 329 ATCCTGCT-ATCTTGCAAGAGGGTATTGATAAGCATATTGCCAATGCAATTTTGATTAAG 271 Query 2698 GTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCT 2757 ||||||||||||||||||| | ||||| | || || ||| | | ||||| || | Sbjct 270 TTTAACCAAATCGGTACTTTATCAGAAACGCTAGATGCGATCTATCTAGCGAAGAAAAAT 211 Query 2758 GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGAT 2817 || || || | | | ||||| |||||||||||||||||||| || || || ||| Sbjct 210 GGCTATGCAACGATTATCTCACATCGTTCAGGTGAAACTGAAGACAGCACCATTGCAGAT 151 Query 2818 ATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGT 2877 | || |||| ||| |||||||| ||||| || || ||| | | || | |||||| Sbjct 150 TTAGCGGTTGGTACTGCTGCTGGTCAGATTAAAACTGGCTCACTATGCCGCTCAGACCGT 91 Query 2878 ATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 |||| |||||||| || |||| |||||||| Sbjct 90 GTTGCAAAATACAATCAGCTGCTACGTATCGA 59 >seq522123 Length=387 Score = 147 bits (162), Expect = 7e-31 Identities = 220/307 (72%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 2608 CAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCA 2667 |||||||| ||||| || || |||||||| || ||| ||| | ||||| | | Sbjct 373 CAATTGGTCGGTGATGATTTATTCGTAACCAATACTAAAATTCTTAAGCGTGGTATCG-A 315 Query 2668 GAACACGCT-GCTAACTCAATCCTTATCAAAGTT-AACCAAATCGGTACTTTGACTGAAA 2725 || | |||||||| || | || || || |||||||||||||| || || |||| Sbjct 314 CAATGGTATCGCTAACTCTATTTTGATTTAAATTCAACCAAATCGGTACCTTAACCGAAA 255 Query 2726 CTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTT 2785 |||| | || || ||||||| ||||| || || | || | || | || |||||| Sbjct 254 CTTTGGCTGCAATTAAAATGGCCAAAGATGCAGGTTTTACTGTTGTTATTTCTCACCGTA 195 Query 2786 CAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAA 2845 || || || ||||||||||| || |||||| | || |||| || || ||||||| Sbjct 194 GTGGCGAGACAGAAGATTCAACGATTGCTGATTTAGCTGTTGGTACAGCGGCAGGTCAAA 135 Query 2846 TTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTA 2905 | || || |||||| | ||| |||||||| ||||||| |||||||||||||| |||| Sbjct 134 TCAA-ACCGGTTCACTAAGCCGTTCTGACCGTGTTGCTAAGTACAACCAATTGCTACGTA 76 Query 2906 TCGAAGA 2912 | ||||| Sbjct 75 TAGAAGA 69 >seq507726 Length=429 Score = 113 bits (124), Expect = 1e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 || || |||||| | ||||||||||| ||||||| |||||||| || |||||| Sbjct 225 TATCCGATCATCTCCATCGAAGATGGCCTGGACGAGTCTGACTGGGATGGCTGGAAAATC 166 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || | |||| |||||||| |||| ||||||||| | |||||||| ||| Sbjct 165 CTGACCGATAAAATCGGTGAGAAAGTTCAGCTGGTAGGTGACGACCTGTTCGTAACCAAC 106 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGT 2699 || ||| || |||| || | | || | | | || ||||| ||||| ||||| | Sbjct 105 ACCAAGATCCTGAAAGAAGGCATCG-ATAAAAAGATCGCCAACTCGATCCTGATCAAGTT 47 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATG 2745 ||||| |||||||| |||| ||||| | || |||||| | ||| Sbjct 46 CAACCAGATCGGTACCCTGACCGAAACACTGGAAGCTATCCAGATG 1 >seq505753 Length=545 Score = 96.9 bits (106), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 2776 TCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCA-ACTAA 2834 ||||| ||||||||||| ||||||||| || || |||||| | || |||| | || Sbjct 529 TCACATCGTTCAGGTGAGACTGAAGATAGTACCATTGCTGATTTAGCCGTTGGATTCTGC 470 Query 2835 CGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCA 2894 |||||||| |||||||| ||||| | | ||| | |||||| | || |||||||| || Sbjct 469 TGCTGGTCAGATTAAGACTGGTTCTCTATGTCGTTCAGACCGTGTGGCAAAATACAATCA 410 Query 2895 ATTGCTTCGTATCGA 2909 |||| |||||||| Sbjct 409 GCTGCTACGTATCGA 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155064667916088