Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031917.1 Length=39949 Score E Sequences producing significant alignments: (Bits) Value seq260826 336 6e-88 seq521789 279 1e-70 seq505459 230 6e-56 seq425690 199 1e-46 seq518294 167 6e-37 seq518758 136 1e-27 seq512719 123 6e-24 seq347572 107 5e-19 seq425038 95.1 3e-15 >seq260826 Length=726 Score = 336 bits (372), Expect = 6e-88 Identities = 379/518 (73%), Gaps = 0/518 (0%) Strand=Plus/Plus Query 24153 ATTACTGTTTTTGCATCTTGCTCACTGATTCCATTTTCAGCCAGTGCGGCAAGTATTGAG 24212 || || || |||||||| | || || || ||||||||| |||||| ||||||||||| Sbjct 208 ATAACGGTCTTTGCATCATCTTCGCTAATGCCATTTTCAACCAGTGTGGCAAGTATTGCA 267 Query 24213 TTGTTAACCTTCTTTTTGTGCTCGGTATCAGCTTCGCGCTTTAACCTTTCGTTTTCTTCC 24272 |||||||| || |||||| | |||||||| || ||||||| ||| |||| ||||| Sbjct 268 TTGTTAACTCTCGCCTTGTGCGCTGTATCAGCCTCACGCTTTAGCCTGTCGTGCTCTTCA 327 Query 24273 CTCTGTAGTTGCGCTTGTCGTGCATTCTCAGCGTTTATTAGCGCCTGCTCAGCTGCTTGT 24332 | ||||| || |||||||||||||||||||| | |||| ||| |||| || ||||| Sbjct 328 CGCTGTAACTGTGCTTGTCGTGCATTCTCAGCATCAATTAACGCTTGCTTTGCCGCTTGC 387 Query 24333 TCGGCTATTTGCTTTTCCCGCTCTGCTTGCTGCTGGCGCTCAATCTCACNNNNNNNNNNN 24392 ||||||||||||||||| ||||||||||||||||||||||| | ||| Sbjct 388 TCGGCTATTTGCTTTTCGCGCTCTGCTTGCTGCTGGCGCTCTTTTTCAGCATTAGCTTCG 447 Query 24393 NNNTCCACCTTTTCCAAATCCCATAGGCGATTTAATTGTAAAGCTTCTTCGTGGTCGCGC 24452 || | | || | ||||| || ||| | ||| || ||||||||||| || || Sbjct 448 CGCTCTAATTGCTCGTATTCCCAAAGTTTATTAAGTTGCAACGCTTCTTCGTGATCACGT 507 Query 24453 TCTATTTGTTCGGCTAAATCCTTTTCAGCTTGAATGCGCTTTTCNNNNNNNNNNNNNNNN 24512 || |||||| | || || |||||||||| | ||||||||| Sbjct 508 TCAATTTGTGCCTGTAGCTCTATTTCAGCTTGTAGGCGCTTTTCTTCATCGAGTACACGC 567 Query 24513 NNGCGCTCAGCATTCCATTCATCAATCAAGGCTGTAAACGGGCTATTTGCCTTTTCAAGT 24572 |||||| ||||||| || ||||| || |||||||| | ||||| ||||||||| Sbjct 568 TTGCGCTCTACATTCCACTCGTCAATTAAAAGCGTAAACGGCTTGTTTGCGTTTTCAAGT 627 Query 24573 CGGAGCTTAATTTCTTTAGCCTCCGCCTCGACTTGCGATTTATATTGCTTTGATAAATCA 24632 || |||||||||||||||| || | || || |||| ||||||||||||||||| || Sbjct 628 CGATGCTTAATTTCTTTAGCTTCTGATTCAACCTGCGCTTTATATTGCTTTGATAGGTCG 687 Query 24633 ATGCGCTTACGATCTAGCTTTTTCAGTAGGTCATTCAC 24670 || ||||| || ||||||||||| |||| ||| || || Sbjct 688 ATACGCTTGCGGTCTAGCTTTTTAAGTAAGTCGTTAAC 725 >seq521789 Length=232 Score = 279 bits (308), Expect = 1e-70 Identities = 201/232 (87%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 32953 GACTTAATCAATGAGTCTAGTTAAATCAATTAAATTTATAGGCACAAACACTCAAGTAGT 33012 |||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||| Sbjct 232 GACTTAATTAATGAGTCTAGTTAAATCAATTAAATTCATAGGCACTAACACGCAAGTAGT 173 Query 33013 TATCCAGCTAATGCAAGAGTTATTTAAGCACAGCGGACAGCTTAAAGTAACCATTGAGCC 33072 |||||||||||||||||| |||| || || ||||||||||||||||| || | ||||| Sbjct 172 CATCCAGCTAATGCAAGAGCTATTCAATCATAGCGGACAGCTTAAAGTGACTGTCGAGCC 113 Query 33073 TTGGAGTGAAAAACGCACCATTAGCGCTAACGCTCAAATTCATGTTTGGTATGCTCAAAT 33132 ||| | || || ||||| |||||||| || ||||||||||| ||||||||||| || | Sbjct 112 CTGGTGCGATAAGCGCACAATTAGCGCCAATGCTCAAATTCACGTTTGGTATGCACAGGT 53 Query 33133 AGCAAAGCAGGATGGGGAGAATGTTTTGAATGTTGAGAACCAGTGCAAGCGT 33184 ||||||||| || || ||||||||||| | ||||||||| |||||||||||| Sbjct 52 AGCAAAGCAAGACGGTGAGAATGTTTTAACTGTTGAGAATCAGTGCAAGCGT 1 >seq505459 Length=584 Score = 230 bits (254), Expect = 6e-56 Identities = 409/590 (69%), Gaps = 10/590 (2%) Strand=Plus/Plus Query 38113 GCTCCTGTAGAATCAAATACCAGTATTAAGGTTGAGCAATCACTT--GCTGAAAAGCTTA 38170 || ||||||||| | |||| || ||| || || | ||| ||| ||||| | ||| | Sbjct 1 GCACCTGTAGAAACGAATAACAATATCAAAGT--ATCAACTGCTTTAGCTGACAGGCTAA 58 Query 38171 CTGGTGGGTCTAAGCGATAATGACCAATCATGAGCAAGCCAAGTGGTATTTAGATAACCT 38230 |||| || ||||| || | ||| ||||| |||||||| ||||||||||| ||||| || Sbjct 59 CTGGCGGATCTAAACGGT---GACAAATCACGAGCAAGCTAAGTGGTATTTGGATAATCT 115 Query 38231 AGATGAGATTGACTATGAGCAGCTAGCCGATGCACTAACCTATAAGTGGTTTAGGCTAAA 38290 ||| | |||| ||||| || ||||||| || | || || |||| || || | || Sbjct 116 AGAGTCGCTTGATTATGACCAAATAGCCGACGCTATGACATACAAGTTTTTCAGAATGAA 175 Query 38291 CACCCTTTACCACATCAAAAACAAGCAAGGCAAGAAGGTCTTATTTACTCCCAATGAGGA 38350 |||| ||||||||||||| | |||| ||| | ||||| | || | || | ||| Sbjct 176 CACCTTTTACCACATCAAGGATAAGCTAGGGCAAAAGGTTCTTTTCAAGATGAACGCGGA 235 Query 38351 ACAAGAAGATTTTTACGTTAACATGCACGGTCGCGATATTATATTGAAGGCTAGGCAATT 38410 || | || || ||| ||||| |||| | | || || || || || || ||||| | Sbjct 236 GCAGGTTGACTTCTACCTTAACCAGCACAATAGGGACATAATTTTAAAAGCCAGGCAGCT 295 Query 38411 AGGTTTTACCACCTTTAAAATGATACATGATCTTGATGATTGCTTGTTCATCGCC-GACT 38469 ||| || || ||| | |||||| || ||| | ||||||||| |||| | |||| ||| Sbjct 296 AGGGTTCACGACCCTGAAAATGTTAATGGATTTAGATGATTGCCTGTTTA-CGCCTAACT 354 Query 38470 TCAACGCTGGTTGTATTTGTCATAACTT-AGATGCGGCTAAGGATATATTCAGAAACAAG 38528 | ||| ||||||||||| |||| | || | || ||||| | | ||| || || Sbjct 355 ACTCGTGTGGCTGTATTTGTCACGACTTAAAATTCAGCAAAGGACGTGTACAGGAATAAA 414 Query 38529 ATTAAGTTTGCTTACCAGAATATAAAGCCCGAACAAATAGAATTGCTATCCGAGATGGGC 38588 || ||||| || | |||||| || || |||||||| | || || | ||| Sbjct 415 ATACGCTTTGCATATCGAAATATAGCACCTGAGCAAATAGAGATTTTAAGTGATGTTGGC 474 Query 38589 TACAAGCTACCAAAGCCTAAAAGCGATAAGGGTAACGCTTACGTATTTGATAACGGCTCA 38648 ||||| || || || | || ||| || | ||||| ||||| || |||||||||||| Sbjct 475 TACAAACTCCCTGCACCAATAAACGACAAAGATAACGGCTACGTGTTCGATAACGGCTCA 534 Query 38649 GCAATTAAGGTTTCAACATCATATCGTGGTGATACCCTGCAATCATTGCA 38698 |||| |||| |||||||||||||| | || || ||| ||||| Sbjct 535 TCAATAGCGGTTAGCACATCATATCGTGGCGGCACTCTACAAAGCTTGCA 584 >seq425690 Length=473 Score = 199 bits (220), Expect = 1e-46 Identities = 215/284 (76%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 38556 CCCGAACAAATAGAATTGCTATCCGAGATGGGCTACAAGCTACCAAAGCCTAAAAGCGAT 38615 || || |||||||| | || ||| | |||||||| || ||| || | || |||| Sbjct 7 CCTGAGCAAATAGAGATCTTAAGCGATGTTGGCTACAAACTCCCATCACCAATAAACGAT 66 Query 38616 AAGGGTAACGCTTACGTATTTGATAACGGCTCAGCAATTAAGGTTTCAACATCATATCGT 38675 || | ||||| ||||| || |||||||||||| |||| |||| |||||||||||| Sbjct 67 AAAGATAACGGCTACGTGTTCGATAACGGCTCATCAATAGCGGTTAGTACATCATATCGT 126 Query 38676 GGTGATACCCTGCAATCATTGCACGTTTCTGAGTTTGGCAAGATATGTAAAAAGTATCCC 38735 || | || || ||| ||||| | ||||||||||| ||||||||||||||||| || Sbjct 127 GGCGGCACTCTACAAAGCTTGCATATATCTGAGTTTGGTAAGATATGTAAAAAGTACCCT 186 Query 38736 GATAAAGCAAAAGAGATTGTTACTGGTGCATTTGAAGCTGTACCCGCTGATGGTGGTGTA 38795 || ||||| ||||||||||| || ||||| ||||||||||| || | ||| |||| Sbjct 187 GAGAAAGCCAAAGAGATTGTAACCGGTGCGTTTGAAGCTGT---GGCGGTTGGCAATGTA 243 Query 38796 ATTACCCTTGAGTCTACCGCGGAGGGTAAAGAGGGTTATTTCTA 38839 || || | ||||| || || ||||||||||| ||||| ||||| Sbjct 244 ATCACAATAGAGTCAACGGCAGAGGGTAAAGAAGGTTACTTCTA 287 >seq518294 Length=326 Score = 167 bits (184), Expect = 6e-37 Identities = 156/195 (80%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 24842 TTTTTATTTGATCTGCAACTTGGTTAGATACAGCATAACCATTTGCTTTTAATTCACTGA 24901 || |||||||||| ||||| |||||||| || | | ||||| || |||||||| | | Sbjct 1 TTCTTATTTGATCGGCAACCTGGTTAGACACTGTAAAACCACCCGCCTTTAATTCGCCAA 60 Query 24902 TAATCATATCAGCTGTTTTTGCACCGCTTTGAATATCAACCAGCATGTACTGCTTGTCAT 24961 |||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 61 TAATCATATCCGCAGTTTTAGCACCGCTTTGAATATCTACCAGCATGTACTGCTTATCAG 120 Query 24962 TTTCAAAAGTGTTGTACCAATTCACATT------TTGTTGCTGACTTGGCTTGGCGC-TC 25014 || |||| |||||||||||||||||| ||| | ||| ||| || |||||| | Sbjct 121 CCTCGAAAGAGTTGTACCAATTCACATTACTAGCTTGCTTCTG-CTTTGC-TGGCGCTTT 178 Query 25015 TTGGCTGGCTGATTT 25029 |||||| ||||| || Sbjct 179 TTGGCTAGCTGAATT 193 >seq518758 Length=382 Score = 136 bits (150), Expect = 1e-27 Identities = 263/384 (68%), Gaps = 7/384 (2%) Strand=Plus/Plus Query 38190 ATGACCAATCATGAGCAAGCCAAGTGGTATTTAGATAACCTAGATGAGATTGACTATGAG 38249 |||| ||||| || ||||| |||||||| ||||| | || | |||||||| Sbjct 2 ATGAATAATCACGATCAAGCGTGTTGGTATTTGGATAATTTGGAATCATTAGACTATGAC 61 Query 38250 CAGCTAGCCGATGCACTAACCTATAAGTGGTTTAGGCTAAACACCCTTTACCACATCAAA 38309 || | |||||||| | || || |||| || || | || ||| | ||||| ||||| Sbjct 62 CAAGTTGCCGATGCCATGACATACAAGTTTTTCAGAATGAATACCTTCTACCATATCAAG 121 Query 38310 AACAAGCAAGGCAAGAAGGTCTTATTTACTCCCAATGAGGAACAAGAAGATTTTTACGTT 38369 | |||| ||| | ||||| | || | || | ||| || | ||||| ||| || Sbjct 122 GATAAGCTAGGGCAAAAGGTTCTTTTCAAGATGAACGCGGAGCAGGTTGATTTCTACCTT 181 Query 38370 AACATGCACGGTCGCGATATTATATTGAAGGCTAGGCAATTAGGTTTTACCACCTTTAAA 38429 ||| |||| | | || || || || ||||||||||| ||||| || || ||| | ||| Sbjct 182 AACCAGCACAATAGAGACATAATTTTAAAGGCTAGGCAGTTAGGGTTCACGACCCTGAAA 241 Query 38430 ATGATACATGATCTTGATGATTGCTTGTTCATCGCCGACTTCAACGC---TGGTTGTATT 38486 ||| || ||| | ||||||||| |||| | |||| | | || | ||| |||||| Sbjct 242 ATGCTAATGGATTTAGATGATTGCCTGTTTA-CGCCTA--ACCACTCGTGTGGCTGTATT 298 Query 38487 TGTCATAACTTAGATGCGGCTAAGGATATATTCA-GAAACAAGATTAAGTTTGCTTACCA 38545 ||||| ||||| || | || || || ||| || ||||||| || ||||| || | Sbjct 299 TGTCACGACTTAAATTCAGCAAAAGACGTATACAGGAAACAAAATACGCTTTGCATATCG 358 Query 38546 GAATATAAAGCCCGAACAAATAGA 38569 |||||| || || |||||||| Sbjct 359 AAATATAGCACCTGAGCAAATAGA 382 >seq512719 Length=379 Score = 123 bits (136), Expect = 6e-24 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 38613 GATAAGGGTAACGCTTACGTATTTGATAACGGCTCAGCAATTAAGGTTTCAACATCATAT 38672 |||||| || | ||| || ||| ||| |||||| ||||| || ||||| ||| Sbjct 244 GATAAGTCGAATGGTTATGTGTTTACTAATGGCTCATCAATTGGCGTGTCAACTGGTTAT 185 Query 38673 CGTGGTGATACCCTGCAATCATTGCACGTTTCTGAGTTTGGCAAGATATGTAAAAAGTAT 38732 ||||||| || ||||||||| |||| |||| |||||||| |||||||||||||||||| Sbjct 184 CGTGGTGGCACACTGCAATCACTGCATATTTCAGAGTTTGGTAAGATATGTAAAAAGTAT 125 Query 38733 CCCGATAAAGCAAAAGAGATTGTTACTGGTGCATTT 38768 || || || || || |||||||| || ||||| ||| Sbjct 124 CCAGAAAAGGCCAAGGAGATTGTGACGGGTGCTTTT 89 >seq347572 Length=720 Score = 107 bits (118), Expect = 5e-19 Identities = 204/298 (68%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 18108 CAGCAACCGTTAACACTTAGTGATAGTGGCAATATAAAGCAAGGCTCTATAA-CTGTAGA 18166 |||||||| ||||| || | || | |||||||||||| || ||| | || Sbjct 470 CAGCAACCTGTAACAATTGATTTCAGCGAGGATATAAAGCAAGAGTCGTTAAGCATTAAG 411 Query 18167 CAACAATTACAGCGAGCAAGTAACACGCGCGTCAATTGGCTTTGCGCCTTTCAATGCTGG 18226 | | | ||||| | |||| || || || |||| || || || || | | || | Sbjct 410 CCAGA-TTACAAAGGGCAAAAGACGCGAGCAACAATAGGTTTCGCACCATATGACGCAGC 352 Query 18227 TAAAAAGGTTGATGATGAAAATGCATCGATTATTTACAAGGGCATTGATTTAATAACTGA 18286 |||||| |||||||||||||| | || ||||||| | || || |||| ||||| Sbjct 351 TAAAAAAGTTGATGATGAAAACTCGTCAATTATTTTTCAATCAATAAATATAATTACTGA 292 Query 18287 AACCACTGGCACACTTGAGCCGCTTGAAGATGATGAGTTTTATTCTAGGTTTCTGACAAA 18346 | || |||||||||||||| | ||||||| || ||||| | |||| | || || Sbjct 291 GGCGACCGGCACACTTGAGCCACAAGAAGATGCGGAATTTTACACGCAGTTTTTAACCAA 232 Query 18347 TAGTGATACGGACATACAAATTGCCGTTGCTGGTACGAATAGGATTTCTCAATTAAAC 18404 ||| ||||| || |||||||| || || | ||| || |||| || || | |||||| Sbjct 231 TAGCGATACTGATATACAAATCGCGGTAGGTGGCACAGCTAGGGTTGCTAACTTAAAC 174 >seq425038 Length=775 Score = 95.1 bits (104), Expect = 3e-15 Identities = 294/454 (65%), Gaps = 1/454 (0%) Strand=Plus/Plus Query 13688 GCTGTTGCGACTGCGCTGGCGACTGCTCAAATAATTAAATACGCCGATTCGTGGACTACG 13747 ||||||| | || ||||| || ||||| || || ||||| || | |||| || Sbjct 321 GCTGTTGGCGCAGCACTGGCCACAGCTCAGATTCAAAAGTACGCTGACGCATGGATTAAC 380 Query 13748 GTGAATAACCGACTAA-GCCAAGCTACCAGCTCAGCAAGTGAGTTTATTAATGCTCAAAA 13806 || || || || ||| || || || || || ||||||| | || || | Sbjct 381 GTTAACAATAGATTAAAGCGCGGCAACAAGTGGTGCGCTTGAGTTTCAGAGGGCGCAGCA 440 Query 13807 AGGCGTTATATCAATTGCCCAGTCATCTGCAACCGATATAGAAGGTGTCGCGTCTGCTTA 13866 || || || ||||| ||||| | ||| ||||| ||||| || |||||| Sbjct 441 GGGTGTCATTTCAATAGCCCAACAAGCTGGCGTTGATATTAGCGGTGTGGCTGATGCTTA 500 Query 13867 CTCAAGACTGGCACAGGCAACTGATGAGCTTGACTTGTCTCAAGAGCAATTATTAAACGT 13926 ||| | | || || ||||| |||| | | | ||| |||| | ||| | || Sbjct 501 CTCTCGTATTGCTCAATCAACTTCTGAGTTGGGGATTAGTCAGGAGCGTATCTTAGATGT 560 Query 13927 TACTAGCAAGCTAACCCTAGCGCTAAAAGCTGGCGGGGCGACTGCTGACGAGACTAGTAG 13986 || || || ||| || || |||| ||||| ||||| || | || || || Sbjct 561 GACCAGGAAAACAACGCTTGCATTAAAGGCTGGTGGGGCTACAGGATCTGAAACATCAAG 620 Query 13987 TGTTATGATCCAGTTAGCTCAGGGTTTAGGCTCTGGTGCGTTGCAGGGTGATGAGCTGCG 14046 |||||||| ||| | | || | | | || || ||||||||||||||||||||||| | Sbjct 621 CGTTATGATTCAGCTTGGCCAAGCTCTTGGTTCAGGTGCGTTGCAGGGTGATGAGCTTAG 680 Query 14047 CTCAATACTTGAGGCGTCAATACCAATAAGTAAGGCGTTAGCTGCTGAATTTGGTGTTAA 14106 ||||||||||| || || ||||| |||| ||||| |||| || ||| | || Sbjct 681 ATCAATACTTGAAGCATCTATACCTATAACGAAGGCTCTAGCAAAGGAGTTTAACGCTAC 740 Query 14107 CGTAGGTCAGTTAAAAACACTTGGCTCGCAAGGT 14140 || ||| | |||||||| || ||| ||||| Sbjct 741 TACTGGGCAGCTTAAAACACTAGGGTCGGAAGGT 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126918214207764