Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_031918.1
Length=45342
Score E
Sequences producing significant alignments: (Bits) Value
seq523693 129 2e-25
seq311730 98.7 3e-16
seq511443 96.9 1e-15
seq517135 84.2 6e-12
>seq523693
Length=695
Score = 129 bits (142), Expect = 2e-25
Identities = 217/310 (70%), Gaps = 7/310 (2%)
Strand=Plus/Minus
Query 33619 ACAATTTCTGTGGTGTATTTTTCAACTCCAGCATTA-TCAGTCCATTTTCTAGTGCGCAA 33677
|||||||| || ||||| || || || || || || |||| || | || ||||
Sbjct 369 ACAATTTCAGTTGTGTACTTGTCTTGGCC-GCTTTGGTCTTTCCACTTACGTGTCTGCAA 311
Query 33678 CTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAG 33737
| |||||||| |||||||| || ||||| | || |||||| | | |||||||| |
Sbjct 310 TTTACCTTCAAGGTAAACTTGCGAACCTTTACGCAGGTACTCAGCCGTGATTTCAGCTAA 251
Query 33738 CTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCA-CCAGTAGCCT 33796
|||||| || || || ||||||||||| || || | || | || | | || || |
Sbjct 250 CTTGCCGAACATCACCACGCGGTGCCACTCGGTACGTTCTTGTTGTTGACCCTGT----T 195
Query 33797 TATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCA 33856
|| ||||| ||||| ||||||| | | ||||| || || |||||||||||
Sbjct 194 GGTCTTTCCAAGATTCGCTGGTAGCAAGGGTAATATTGGCCACGGCATTGCCATTTGGCA 135
Query 33857 TGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCCGC 33916
| || |||||||| || || |||||||| |||||| | || ||||| || || || |
Sbjct 134 TATAACGCACTTCGGGATCTTGGCCTAAATTGCCGACTAATATGACTTTGTTAACACCAC 75
Query 33917 GAGTTGCCAT 33926
|| | |||||
Sbjct 74 GACTGGCCAT 65
>seq311730
Length=9896
Score = 98.7 bits (108), Expect = 3e-16
Identities = 207/308 (67%), Gaps = 3/308 (1%)
Strand=Plus/Plus
Query 33619 ACAATTTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCATTTTCTAGTGCGCAAC 33678
|||||||| || ||||||||||| || ||||||||||| | || | |
Sbjct 2712 ACAATTTCAGTCGTGTATTTTTCTTGGCCTTGTGGGTCAGTCCATTTACGTGTTTGAAGT 2771
Query 33679 TGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGC 33738
| |||||||| ||||| |||||| ||||| | ||| |||||| ||||||| || | |
Sbjct 2772 TTACCTTCAACATAAATTTGTGAACCTTTACGGCAATATTCACCAACAATTTCTGCTAAC 2831
Query 33739 TTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTA 33798
|||||||| | || || |||||||| ||||||| || | | ||||| ||
Sbjct 2832 TTGCCAAAAAATACCACACGGTGCCACTCAGTTTTATCAACCATTTGGCCAGTGTTTTTG 2891
Query 33799 TCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATG 33858
|| || | || || || || | | | || || ||| || ||| || |||||
Sbjct 2892 TCTTTGTAGCTATCTGAAGTTGCTAAGGTGATATTTGCTACACCGTTGCCGTTAGGCATA 2951
Query 33859 TATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCCGCGA 33918
|| || ||||| || || || ||||| | || | | |||||||| || || |||||
Sbjct 2952 TAACGTACTTCAGGATCTTGTCCTAAATTACCAACCAAAATTACTTTGTTCACACCGCG- 3010
Query 33919 GTTGCCAT 33926
||||||
Sbjct 3011 --TGCCAT 3016
>seq511443
Length=1027
Score = 96.9 bits (106), Expect = 1e-15
Identities = 183/267 (69%), Gaps = 3/267 (1%)
Strand=Plus/Minus
Query 33660 CCATTTTCTAGTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTC 33719
||| || || || |||| | ||||| ||||| |||| ||||||||| | | |||||
Sbjct 743 CCACTTACTGGTTTGCAATTTGCCTTCTAAATATACTTTAGAGCCTTTCTTTAAGTACTC 684
Query 33720 ACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTT 33779
|||||||||||| || || | | | ||||| | | |||||| || || | || |
Sbjct 683 ACCAGCAATTTCCGCAAGACGACGATACATAACAATGTTGTGCCACTCGGTACGTTCTTG 624
Query 33780 TTTCTCACCAGTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAAC 33839
| | ||| | | | || ||||| || || ||| || | || | |||||||||
Sbjct 623 CATTTGACC--TTGT-TGGTCTTTCCACGACTCACTTGTCGCTATAGTAAAGTTGGCAAC 567
Query 33840 AGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGAT 33899
||| ||| ||||||||||| || || || || || | ||||| | |||| | ||
Sbjct 566 AGCATTGCCGTTTGGCATGTAACGAACCTCAGGATCTTTACCTAAGTTACCGACCAAAAT 507
Query 33900 TACTTTATTTACGCCGCGAGTTGCCAT 33926
|||||||| || || ||| | |||||
Sbjct 506 CACTTTATTCACACCACGACTAGCCAT 480
>seq517135
Length=240
Score = 84.2 bits (92), Expect = 6e-12
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 33682 CCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTG 33741
||||||| ||| |||| ||| || || | | ||| ||||| ||||||||||| ||||||
Sbjct 154 CCTTCAAGATATACTTTTGAACCCTTTTTTAAATATTCACCCGCAATTTCAGCAAGCTTG 213
Query 33742 CCAAAGATAACTACGCGGTGCCATTC 33767
||||| ||||| || || ||||||||
Sbjct 214 CCAAACATAACAACACGATGCCATTC 239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144068120980896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |