Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq509954 145 1e-29 seq127494 93.3 6e-14 >seq509954 Length=433 Score = 145 bits (160), Expect = 1e-29 Identities = 261/378 (69%), Gaps = 5/378 (1%) Strand=Plus/Plus Query 107893 GCAGAAGCTGAGCTAGCTAACATTCTCTCCTCTGAGATCCTAGCTGAAATCAACCGCGAA 107952 ||||||| || || || || ||||| || |||| || || || ||||| ||||| || Sbjct 36 GCAGAAGAAGAACTTGCAAATATTCTTTCAACTGAAATTCTTGCAGAAATTAACCGTGAG 95 Query 107953 GTCATCCGTACAGTATACAAGACTGCTGTTCCTGGTGCTCAGGCTAACGTTGCTCAA--G 108010 | || ||||| ||||| ||||| |||||||| || || ||| ||| | Sbjct 96 CTAATTCGTACCGTATATGCAACTGCAAAACCTGGTGCACAAACTG--GTTCAGCAAACG 153 Query 108011 CTGGCGTATTTGACCTTGACGTTGACTCCAACGGTCGCTGGTCTGTTGAGAAGTTCAAGG 108070 |||| | || || | ||||| || | || ||||||||||| || || || ||||| | Sbjct 154 CTGGTATCTTCGATTTAGACGTAGATGCAAATGGTCGCTGGTCAGTAGAAAAATTCAAAG 213 Query 108071 GTCTTATCTTCCAAATGGAAAGAGACGCTAACGCAATCGCTCAGCAAACTCGTCGTGGGA 108130 | ||||| |||||||| ||| | || |||||| ||||||| | |||| | ||||| | Sbjct 214 GACTTATGTTCCAAATTGAACGTGATGCTAACCAAATCGCTAAAGAAACCAGACGTGGTA 273 Query 108131 AGGGCAACATCATCATCTGTTCCGCAGATGTTGCTTCCGCTCTAACTATGGCTGGTGTGC 108190 | || ||| | || |||||||| | || || ||||| || | || ||||| | | Sbjct 274 AAGGTAACTTTATTATCTGTTCATCTGACGTAGCTTCTGCATTGGCTGCTGCTGGAATCC 333 Query 108191 TTGATTACACCCCTGCTCTTAACGCCAACCT-TAACGTTGACGACACCGGCAACCTATTC 108249 |||||| | | |||||| | || || || || || || || ||||| || ||| Sbjct 334 TTGATTTCGCACCTGCTATCTCTGCAAATCTACAAAGTAGATGATACCGGTAATACATTT 393 Query 108250 GCTGGTACTCTACAAGGT 108267 |||||| |||| | ||| Sbjct 394 GCTGGTGTTCTAAACGGT 411 >seq127494 Length=1980 Score = 93.3 bits (102), Expect = 6e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859 |||||||||||||||||||||||| ||||| |||||| ||||||||||||| |||||| Sbjct 1611 TAGCTCAGTTGGTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGACTCCGTTTG 1670 Query 142860 TCTCCACCA 142868 |||||||| Sbjct 1671 GCTCCACCA 1679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686917160093520