Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1948 181 2e-43 seq157 111 2e-22 seq620 75.2 2e-11 >seq1948 Length=7640 Score = 181 bits (200), Expect = 2e-43 Identities = 186/235 (79%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| |||||| ||||| |||||||||| |||||| | Sbjct 5467 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 5524 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| ||||| | || Sbjct 5525 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCAACGGGTT 5584 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| ||| ||||| |||| | | || |||||| | || ||||||| |||||||||| Sbjct 5585 ACCCACGCCTCTCGGCGAAGGGTAGACACACGTTGA-TCCACTCAGTGTGGCGCGCGTGC 5643 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 5644 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 5697 >seq157 Length=1503236 Score = 111 bits (122), Expect = 2e-22 Identities = 183/258 (71%), Gaps = 21/258 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| ||| |||||| | |||||| ||| |||||| | Sbjct 1285274 GTACAAAGGGCAGAGACTGAGTCAATGTGAGCTT--------------ACTGGGAATT-C 1285230 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| |||||| ||||| | || Sbjct 1285229 CTCGTTCATGGGTAATAATTGCAATCCCCAATCCCTGTCACGAGTGGGGTTCAACGGGTT 1285170 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| | | ||||| |||| | | | || ||| | || ||||||| ||| |||||| Sbjct 1285169 ACCCACGCATCTCGGCGAAGGGTAGACATACGCTGA-TCCACTCAGTGTGGCGTGCGTGC 1285111 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||| | |||||||||||||||||||||||||||||| ||||| || ||||| ||||| Sbjct 1285110 ACCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGCGTGG-CTAAA 1285053 Query 239 AGGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 1285052 CGCCACTTGTCCCTCTAA 1285035 >seq620 Length=124810 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/58 (90%), Gaps = 1/58 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT 58 ||||||||||||||||| || ||||||||||||| ||||| || ||||||| |||||| Sbjct 77378 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGTGCTTACTGGGAATT 77322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751947285740