Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1948 250 4e-64 seq157 179 6e-43 seq170 154 2e-35 seq11 123 4e-26 seq42 116 6e-24 seq4 91.5 2e-16 seq154 87.8 3e-15 >seq1948 Length=7640 Score = 250 bits (276), Expect = 4e-64 Identities = 206/247 (83%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 5626 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 5684 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA---- 131 || || | |||||| | |||| | |||||||||||||| | | | ||| | Sbjct 5685 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACTCGGACCGCACGGG 5743 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 ||||| | ||| |||||| || ||||||||||||||||||||||||||||||||| Sbjct 5744 GTCGA-GTAACTAGTTAGCATGTCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 5802 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| Sbjct 5803 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCCATCA 5862 Query 252 ATCTGTC 258 ||||||| Sbjct 5863 ATCTGTC 5869 >seq157 Length=1503236 Score = 179 bits (198), Expect = 6e-43 Identities = 173/218 (79%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| ||| |||||| ||| | ||||||||||||||||||||||||||||||| || Sbjct 1285128 TCAGTGTGGCGTGCGTGCACCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 1285070 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC----CAGCCACCAACCATA 131 || || | | |||| | |||| | |||||||||||||| | | ||| | Sbjct 1285069 AATCTCGCGT-GGCTAAACGCCACTTGTCCCTCTAAGAAGTTGAACTGGGACCGCACGGG 1285011 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 ||||| | ||| |||||| || |||||| |||||||||||||||||||||||||| Sbjct 1285010 GTCGA-GTAACTAGTTAGCATGTCGGAGTCTCGATCGTTATCGGAATTAACCAGACAAAT 1284952 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||| |||| ||||||||| |||||||||||||||||| Sbjct 1284951 CACTTCACCCACTAAGAACAGCCATGCACCACCACCCA 1284914 >seq170 Length=1371197 Score = 154 bits (170), Expect = 2e-35 Identities = 94/100 (94%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| Sbjct 42384 GTCCCGTTCGTTATCGGAACTAACCAGACAGATCGCTCCACCAACTAAGAACGGCCATGC 42325 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||||||||||||||||| Sbjct 42324 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 42285 >seq11 Length=6969134 Score = 123 bits (136), Expect = 4e-26 Identities = 98/117 (84%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| || |||||||||||||| |||||||||||||||||| |||||| Sbjct 2935560 CTAGTTAGCATGTCGTAGTCTCGTTCGTTATGGGAATTAACCAGACAAATTGCTCCACAC 2935501 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||||||||| |||| |||| |||||| ||||||||||||||| ||||| Sbjct 2935500 ACTAAGGACGGCCATG---CACCTCCCACAGAATCGAGAAAGAGCTATCAACCTGTC 2935447 >seq42 Length=4037359 Score = 116 bits (128), Expect = 6e-24 Identities = 98/120 (82%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| || | | || ||| ||||||||||||||||||||||| |||||||| Sbjct 2552925 CTAGTTAGCATGTCACAATTTCATTCATTATCGGAATTAACCAGACAAATTGCTCCACCA 2552866 Query 202 ACTAAGAACGGCCATGCA---CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| || ||||||| ||||| |||||||||||||||| |||| Sbjct 2552865 ACTAAGAACGGCCATTCAGGGGAGCCACCCACAGAATTGAGAAAGAGCTATCAATTTGTC 2552806 >seq4 Length=8995252 Score = 91.5 bits (100), Expect = 2e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||||||||| |||||||||||||||||| || ||| ||||| ||||||||| Sbjct 2514182 CTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGGATCCAGAAATAGCTATCAAG 2514241 Query 254 CTGTC 258 ||||| Sbjct 2514242 CTGTC 2514246 >seq154 Length=1518030 Score = 87.8 bits (96), Expect = 3e-15 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||| || | ||||| ||||||| ||||||||| ||||||| | |||||| ||| Sbjct 434679 TAGCATGTCAGAGTCTCCCCCGTTATCAAAATTAACCAAACAAATCGCACCACCAGTTAA 434738 Query 207 GAACGGCCATGCACCACCACCCA 229 ||||||||||||||||||||||| Sbjct 434739 GAACGGCCATGCACCACCACCCA 434761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796744145316