Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq15 360 6e-97 seq29 279 2e-72 seq62 125 2e-26 seq48 102 3e-19 seq117 98.7 3e-18 seq22 98.7 3e-18 seq115 89.7 2e-15 seq37 84.2 7e-14 >seq15 Length=6148218 Score = 360 bits (398), Expect = 6e-97 Identities = 294/354 (83%), Gaps = 15/354 (4%) Strand=Plus/Minus Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC--GA---AACGGCT--C 239 |||||| ||||| ||||| ||||||||||||| | | | || | | || | Sbjct 723964 TTAAGTGAAAAATGGATAAC---AGTGGTATTTCACCAGTGGCTGGAGCCACCCCCTTCC 723908 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 ||||||||||||||||| ||| ||| ||||||| | | |||||| |||| | ||| || Sbjct 723907 CCACTTATTCTACACCTTTCATGTCTTTTCACAGTGCCAAACTAGAATCAAACCCAATAG 723848 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| Sbjct 723847 GGTCTTCTTTCCCCACTGATTCTGCAAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 723788 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 | || |||||||||||||||||||||| ||||||||||||| |||||||||| |||||| Sbjct 723787 GCAGCTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGTGTCACTAATTTGATGACT 723728 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||||||| ||||| |||||| |||||||||| || ||||| || |||| Sbjct 723727 AGGCATTTGGCTATCTTAACAGAGTCGTAGTTACTCCTGCTGTTTATCCAAGCTT----- 723673 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| || ||||||| |||||||||||||||||||||| |||||| Sbjct 723672 CATTTCTTCACTTCGATATTCAGAACACTGGGCAGAAATCACATTGCATCAACA 723619 >seq29 Length=4831287 Score = 279 bits (308), Expect = 2e-72 Identities = 171/182 (94%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 190154 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTTCCT 190095 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||| |||||||||||||||| || |||||| ||||||||||||||| ||||||||||| Sbjct 190094 TGGCTCTGGTTTCGCTAGATAGCAGCTAGGGATAGTGGGAATCTCGTTCATCCATTCATG 190035 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 || ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 190034 CGTGTCTCTAATTAGATGATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 189975 Query 459 CC 460 || Sbjct 189974 CC 189973 >seq62 Length=3339174 Score = 125 bits (138), Expect = 2e-26 Identities = 88/99 (89%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||| ||||||||||||||||| || || ||| || |||||||||| ||| Sbjct 2969034 TTAAGAGAGTCCTAGTTACTCCCGCCGTTGACT-GCACTTCATTTAATTTCTTCATTTTA 2969092 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| |||||||||||||||||||||||||| Sbjct 2969093 ACATTCAGAGCATTGGGCAGAAATCACATTGCGTCAACA 2969131 >seq48 Length=3648740 Score = 102 bits (112), Expect = 3e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 || |||||||||||||| ||||||| || ||||||| || ||| | |||||||||| Sbjct 779593 CTCCCTTAAGAGAGTCACGATTACTCCTGCAGTTTACCTGCACTTTCTGAAATTTCTTCA 779652 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||||||||| |||||| |||||||| ||| | |||||| Sbjct 779653 CTTCGACATTCAGACCACTGGCCAGAAATCTCATCACCTCAACA 779696 >seq117 Length=2128962 Score = 98.7 bits (108), Expect = 3e-18 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 |||| ||||| ||||| | ||||||| |||| |||| | ||||||||||||||| ||| Sbjct 608098 TCTTCTGCTCCACAGGTGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGCATTAC 608039 Query 66 GGTTT-AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||||||| | ||||||| |||| ||||||||| || |||| Sbjct 608038 AGTTTGGACAGATGTACTGCCCCAGTCAAAGCCCCCACCTGCCACTGTC 607990 >seq22 Length=5389195 Score = 98.7 bits (108), Expect = 3e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1942193 CCCGCCGTTTACCTGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTAGGCAG 1942134 Query 515 AAATCACATTGC 526 || ||||||| Sbjct 1942133 TCATAACATTGC 1942122 >seq115 Length=2136619 Score = 89.7 bits (98), Expect = 2e-15 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 || |||||||| |||||||| || ||||||||||| | | ||| ||| ||| | ||||| Sbjct 556356 ATTGGGACAGTAGGAATCTCATTCATCCATTCATGTCCTTTACTTATTTGATCATGAGGC 556297 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 |||||||||| |||||||| | ||| |||| || Sbjct 556296 ATTTGGCTACTTTAAGAGAATTCTAGCTACTACC 556263 >seq37 Length=4412132 Score = 84.2 bits (92), Expect = 7e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79 |||| || |||| |||| | || | ||||||||||||||||||| |||| |||| ||| Sbjct 3179821 GGAGGTTCCTGTCCTCCCTCAGCTCGCCTTAGGACACCTGCGTTACAGTTTGACAGGTGT 3179880 Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || ||||| ||||||||||||| | || |||| Sbjct 3179881 ACCCCCCCATTCAAACTCCCCACCAGCCACTGTC 3179914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635081676928