Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq396 192 2e-46 seq287 176 1e-41 seq94 104 7e-20 seq1 100 9e-19 seq55 95.1 4e-17 seq75 89.7 2e-15 seq194 82.4 2e-13 seq64 78.8 3e-12 seq3402 77.0 1e-11 >seq396 Length=368505 Score = 192 bits (212), Expect = 2e-46 Identities = 180/228 (79%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||| | | ||| || ||||||| ||||| | |||||||| | Sbjct 319761 GTACTCATTCCAATTACAGGCCTTGAAAAAGTCCTGTATTGTTATTTTTCGTCACTACAT 319702 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| ||||||| |||||||||||| | | ||||||||||||||||||||||||| ||| Sbjct 319701 CCCCAAGTCGGGAGTGGGTAATTTGCACTC-TGCTGCCTTCCTTGGATGTGGTAGCTGTT 319643 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 | ||||||||||||| | |||| ||||||| |||||||||||||||| | ||||| | Sbjct 319642 TTTCAGGCTCCCTCTTCAGAATTGAACCCTGATTCCCCGTTACCCGTGGTCACCATTAAA 319583 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAA 228 ||| || |||| | ||| ||||||||| ||| |||||| Sbjct 319582 GGCACATAAAGTACC------ACTTGCTAGGGCAGACATTCAAATGAA 319541 >seq287 Length=659788 Score = 176 bits (194), Expect = 1e-41 Identities = 183/235 (78%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||| |||||| | || | |||||| ||||||| ||||| | ||||||||||||| Sbjct 187652 CATTCACATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCT 187711 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCC-TTCCTTGGATGTGGTAGCCGTTTCT 123 | ||||||| || | ||||| ||| ||||||| ||||||||||||||||| ||||| | Sbjct 187712 GAGTCGGGAGGGGATCATTTGTGCGTGTGCTGCCTTTCCTTGGATGTGGTAGTCGTTTGT 187771 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||| | ||||| ||||||||||||| ||||||| ||||| || | | ||||| ||| Sbjct 187772 CAGGTT--CTCTCTGGAATCGAACCCTGATTCCCCATTACCTGTGGTCAGACATGGCAGG 187829 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 | || | |||||||||||| ||| |||| ||| |||||| |||||||| Sbjct 187830 CAGATAAAGTGCCATCGAAAGTTAATATGGCAAGCATTCGAATGAGACATCGCCG 187884 >seq94 Length=2498258 Score = 104 bits (114), Expect = 7e-20 Identities = 102/129 (79%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAAATAAACGATA 407 |||||||||||||||| |||| |||||||| ||||| | | | |||| | ||| ||| Sbjct 463583 TATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGTGGATGAGCGATCATAGGAACCATA 463524 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 | | ||||||||||||||| |||||||||||| | | | | ||||||||| ||||| Sbjct 463523 AGTTATTTAATGAGCCATTTGCAGTTTCACTGCACTGGCCACATGTACTTAGACCTGCAT 463464 Query 468 GGCTTAATC 476 |||||||| Sbjct 463463 -GCTTAATC 463456 >seq1 Length=12616905 Score = 100 bits (110), Expect = 9e-19 Identities = 122/162 (75%), Gaps = 12/162 (7%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT-ATCAAATAAA 402 |||||| |||||| |||||| |||||||| || | | | | |||||| || Sbjct 9407348 GCATGT--TAGCTCCAGAATT------GTTATCCAAATAACCAAGGAGTGATCAAAGGAA 9407297 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACA 462 | ||||||||||||||||||||||| ||| ||||||| |||| | |||||| || Sbjct 9407296 CCATAACTGATTTAATGAGCCATTCACAGCTTCACTGAGGCAGTTGCATGTACTTACACC 9407237 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| |||||| ||||| |||||||| ||||||| ||| Sbjct 9407236 AGCATGGATTAATC--TGAGATAAGCATAT-ACTACTGACAG 9407198 Score = 93.3 bits (102), Expect = 1e-16 Identities = 100/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 |||||| |||||||||||||| | ||||| ||||||| ||||| |||| ||||||||| | Sbjct 9407545 TGCCTTTCTTGGATGTGGTAGGCATTTCTTAGGCTCCTTCTCCAGAATTGAACCCTAAAT 9407486 Query 155 CCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCA 214 | ||||||| ||||||||| | ||| | | |||||||||| | || ||| Sbjct 9407485 CTGTGTTACCCACAATCACCATGGTACG-CACAAGTGTTCCATCGAAAGCTAATGGGGTG 9407427 Query 215 GAAATTTGAAT 225 || ||| |||| Sbjct 9407426 GACATTCGAAT 9407416 >seq55 Length=3460077 Score = 95.1 bits (104), Expect = 4e-17 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| ||||||| |||| | || |||||||| | |||| ||||| | ||||||||| Sbjct 767886 TACTAATTCCAACTACAGGGCCTCAAAAGAGTCATGTACTGTTATTTTTCATCACTACCT 767945 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 | | || |||| |||||||||||| ||||||||| ||||||||| |||||||| Sbjct 767946 CTTCAGGTTGGGAATGGGTAATTTGCTTCCCTGCTGCCATCCTTGGATATGGTAGCC 768002 >seq75 Length=2988089 Score = 89.7 bits (98), Expect = 2e-15 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 |||||||||||| ||||||||||| |||| | ||||| |||||| || ||||| Sbjct 2335834 GAATCGAACCCTGATTCCCCGTTAGCCGTGGTCACCATAGTAGGCATATAAAGTACCACT 2335775 Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||||| |||||||||||| |||||||||| Sbjct 2335774 GAAAGCTGATAGGGCAGACATTTGAATGA 2335746 >seq194 Length=1173042 Score = 82.4 bits (90), Expect = 2e-13 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 |||||||||||||| | | ||| || ||||||||||| | ||||| || || ||| | | Sbjct 643356 GATTGGGTAATTTGTGTGACTGTTGGCTTCCTTGGATATAGTAGCTGTGTCCAAGGGTTC 643415 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 |||| | | || || || ||||| ||||| | | | || |||| | || || Sbjct 643416 CTCTACAGGATTAAATCCGGATTCCTGGTTACTCATGGCCACGATGGCACGCACATAAAG 643475 Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTT 221 ||||||| | || |||| ||||||| |||| Sbjct 643476 TACCATCAAGAGATGATTGGGCAGATATTT 643505 >seq64 Length=3290765 Score = 78.8 bits (86), Expect = 3e-12 Identities = 85/109 (78%), Gaps = 8/109 (7%) Strand=Plus/Plus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA----CTA 393 || || |||||||| |||||||||||| | | |||||| || ||||| | | | | Sbjct 70780 TTGTTTGCATGTAT-AGCTCTAGAATTGCTGCAGTTATC--TG-AGTAATGGATGAGCAA 70835 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT 442 ||||| ||| ||||||||||||| || |||| ||||||||||||||| Sbjct 70836 TCAAAGGAACCATAACTGATTTAAAGAAACATTTGCAGTTTCACTGTAT 70884 >seq3402 Length=3798 Score = 77.0 bits (84), Expect = 1e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||| ||||||||||||||||||||||||||||||||||||| | || | ||||||| Sbjct 62 AAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGCGTGTACTTAG 3 Query 460 AC 461 || Sbjct 2 AC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510290707456