Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq117 217 1e-51 seq48 123 2e-23 seq64 111 1e-19 seq28 89.7 4e-13 >seq117 Length=2128962 Score = 217 bits (240), Expect = 1e-51 Identities = 397/574 (69%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | ||| || || ||||| || || | |||||| || |||||||| ||| Sbjct 877412 AGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATT 877471 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||| || || ||||| |||||||||| |||||| || || ||||| | ||| Sbjct 877472 TCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTG 877531 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || ||||| ||||| | ||||||||| || ||||| || || ||||| ||||| || Sbjct 877532 CAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCA 877591 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAA-TGTTC 66243 | |||||| | ||||||||| ||| | |||| || | || || || | Sbjct 877592 TACCAAAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCCTTCTCATATCTGGT- 877650 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 |||||| | ||| || || ||||| || ||| | || || | | ||||| Sbjct 877651 GTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACA 877710 Query 66304 CATCAGCGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCAG 66361 |||||| ||||| || | | |||||| || || ||| || || ||||| ||||| Sbjct 877711 CATCAGGGACCAGTCTTCGT--TGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCAC 877768 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCT-CAATGCCGTGATTTTTGCGCAAGTC 66420 ||||||||||| || || | ||||| ||||||| | | ||||| || || || || Sbjct 877769 AGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTC 877827 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||||| ||||| | ||| ||||| || |||||||| |||||||| | ||| | Sbjct 877828 CAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCAGGTCT 877887 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 |||| || || || || || || || || |||||| | || | |||||| || || Sbjct 877888 TTTGTTCCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGAC 877947 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 ||||||||| || ||| ||||||||| ||||| Sbjct 877948 GAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATG 877981 >seq48 Length=3648740 Score = 123 bits (136), Expect = 2e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||| ||||| || ||||||| || ||||||||||| ||||||| Sbjct 3224958 TGGAGCGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCAGA 3225017 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| |||||||||| || Sbjct 3225018 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGG 3225077 Query 61376 A 61376 | Sbjct 3225078 A 3225078 Score = 120 bits (132), Expect = 2e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||| ||||| || ||||||| || ||||||||||| ||||||| Sbjct 3236272 TGGAGCGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCAGA 3236213 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| |||||||| || | || ||||| |||||||||| || Sbjct 3236212 TCGCCATGGAGAACATCCACTCAGAGATGTATAGCCTGCTGATCGACACGTACATCAAGG 3236153 Query 61376 A 61376 | Sbjct 3236152 A 3236152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || ||||| || ||||| | |||||||||||||| | ||||| |||| |||||| Sbjct 3224591 GACAACCCTCGCCGCTTCGTCATCTTCCCCATCGAGTACCACGATATCTGGCAGATGTAC 3224650 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| |||||||| Sbjct 3224651 AAGAAGGCAGAGGCGTCCTTCTGGACGGCAGAGGAGGT 3224688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || ||||| || ||||| | |||||||||||||| | ||||| |||| |||||| Sbjct 3236639 GACAACCCTCGCCGCTTCGTCATCTTCCCCATCGAGTACCACGATATCTGGCAGATGTAC 3236580 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| |||||||| Sbjct 3236579 AAGAAGGCAGAGGCGTCCTTCTGGACGGCAGAGGAGGT 3236542 >seq64 Length=3290765 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| || || ||| Sbjct 2550743 GTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGA 2550684 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 |||||||| | ||||| ||||||||||| | |||||| || || || || || || Sbjct 2550683 TTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGC 2550624 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||||||||||| ||| || | ||||||||| Sbjct 2550623 GACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACC 2550585 >seq28 Length=5070235 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||| || || | || ||||| | |||||| |||| ||||| ||| |||| | Sbjct 3407446 CAGGAGGTACAGGTCCCTGAAGCGCGATCCTTCTACAGCTTTCAGATCCTCATAGAGACT 3407505 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 |||||||| |||||||||||| | |||||| | || ||||| ||||| Sbjct 3407506 GTCCACTCAGAGATGTACAGTATGCTCATCAACACTTACATTAGGGA 3407552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397532938975040